miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25040 3' -57.2 NC_005336.1 + 129815 0.67 0.78161
Target:  5'- -cGACUGCGCga-AGCugGUGGUGCg-- -3'
miRNA:   3'- cuCUGACGCGaagUCG--CGCCACGagu -5'
25040 3' -57.2 NC_005336.1 + 124039 0.67 0.78161
Target:  5'- -cGACUGuCGCgucgcgCGGcCGCGGcGCUCGc -3'
miRNA:   3'- cuCUGAC-GCGaa----GUC-GCGCCaCGAGU- -5'
25040 3' -57.2 NC_005336.1 + 72309 0.67 0.772193
Target:  5'- -cGGCgUGCGCgugaUCcGCGaGGUGCUCAa -3'
miRNA:   3'- cuCUG-ACGCGa---AGuCGCgCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 134436 0.67 0.772193
Target:  5'- gGAcGCUGCuGCUggcgguugccgCAGUGaCGGUGCUCGg -3'
miRNA:   3'- -CUcUGACG-CGAa----------GUCGC-GCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 58151 0.67 0.762648
Target:  5'- -uGGCUGCGCggcgaCGGCGCGGccGCg-- -3'
miRNA:   3'- cuCUGACGCGaa---GUCGCGCCa-CGagu -5'
25040 3' -57.2 NC_005336.1 + 50751 0.67 0.752984
Target:  5'- -cGcCUGCGaaacuaCGGCGcCGGUGCUCAc -3'
miRNA:   3'- cuCuGACGCgaa---GUCGC-GCCACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 15763 0.67 0.752984
Target:  5'- aGGGCgGCGCgcaCGGCGCGcguGUGCUUg -3'
miRNA:   3'- cUCUGaCGCGaa-GUCGCGC---CACGAGu -5'
25040 3' -57.2 NC_005336.1 + 97915 0.67 0.752984
Target:  5'- cGGAC-GCGCcgcagggCAGCGCGGUGaUCGc -3'
miRNA:   3'- cUCUGaCGCGaa-----GUCGCGCCACgAGU- -5'
25040 3' -57.2 NC_005336.1 + 99495 0.67 0.752984
Target:  5'- --cGCUGCGCgggUCGGCGCGccGCUgGa -3'
miRNA:   3'- cucUGACGCGa--AGUCGCGCcaCGAgU- -5'
25040 3' -57.2 NC_005336.1 + 50840 0.67 0.751038
Target:  5'- uGAGGCUGCGCacgagcccgcucUCGGCGCGGacgucgaagGcCUCGg -3'
miRNA:   3'- -CUCUGACGCGa-----------AGUCGCGCCa--------C-GAGU- -5'
25040 3' -57.2 NC_005336.1 + 20932 0.67 0.750063
Target:  5'- aAGACUGUgggcgauuuuauguGCgugUCAGCGCGG-GCUg- -3'
miRNA:   3'- cUCUGACG--------------CGa--AGUCGCGCCaCGAgu -5'
25040 3' -57.2 NC_005336.1 + 44305 0.67 0.747133
Target:  5'- cAGACUGCGCagcugcugggcuaCGGCGCGaGUGCg-- -3'
miRNA:   3'- cUCUGACGCGaa-----------GUCGCGC-CACGagu -5'
25040 3' -57.2 NC_005336.1 + 118167 0.67 0.743212
Target:  5'- -cGGCgagGCGCUUgaCGGCGCGGaaCUCGg -3'
miRNA:   3'- cuCUGa--CGCGAA--GUCGCGCCacGAGU- -5'
25040 3' -57.2 NC_005336.1 + 94263 0.67 0.743212
Target:  5'- -cGGCgagGUGCUcgaCGGCGCGGUGUcCAg -3'
miRNA:   3'- cuCUGa--CGCGAa--GUCGCGCCACGaGU- -5'
25040 3' -57.2 NC_005336.1 + 10542 0.67 0.743212
Target:  5'- cGGGGCUaGCGCgUCGGUGC-GUGCgUCGa -3'
miRNA:   3'- -CUCUGA-CGCGaAGUCGCGcCACG-AGU- -5'
25040 3' -57.2 NC_005336.1 + 112058 0.68 0.73334
Target:  5'- --aGCUGcCGCUUgCAGCGCucgaggucgcGGUGCUCc -3'
miRNA:   3'- cucUGAC-GCGAA-GUCGCG----------CCACGAGu -5'
25040 3' -57.2 NC_005336.1 + 69800 0.68 0.73334
Target:  5'- cAGACgGUGC-UCAGCGUGuGcUGCUCGc -3'
miRNA:   3'- cUCUGaCGCGaAGUCGCGC-C-ACGAGU- -5'
25040 3' -57.2 NC_005336.1 + 134128 0.68 0.723378
Target:  5'- aGAGACgcuggcgGCGCUccCGGcCGCGGacagGCUCGc -3'
miRNA:   3'- -CUCUGa------CGCGAa-GUC-GCGCCa---CGAGU- -5'
25040 3' -57.2 NC_005336.1 + 94173 0.68 0.723378
Target:  5'- gGAGAUUcCGCggUCGGCGCcGGUGCg-- -3'
miRNA:   3'- -CUCUGAcGCGa-AGUCGCG-CCACGagu -5'
25040 3' -57.2 NC_005336.1 + 25799 0.68 0.723378
Target:  5'- uGGAUUGCGCUUUcuguuuacacuGGCGCugguGGUGgUCAg -3'
miRNA:   3'- cUCUGACGCGAAG-----------UCGCG----CCACgAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.