miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25040 5' -59 NC_005336.1 + 67089 0.66 0.779922
Target:  5'- -gCGAGcucACCGCGCc-CGGCUgCAAGGu -3'
miRNA:   3'- uaGCUC---UGGCGCGacGCCGA-GUUCCc -5'
25040 5' -59 NC_005336.1 + 127166 0.66 0.779922
Target:  5'- --aGAGGCCGCGCacGCGGCgcgCGAu-- -3'
miRNA:   3'- uagCUCUGGCGCGa-CGCCGa--GUUccc -5'
25040 5' -59 NC_005336.1 + 42307 0.66 0.779922
Target:  5'- aGUCGugcGGCUGCGCcucgaggcUGCGGCgcuggucgUCAAGGa -3'
miRNA:   3'- -UAGCu--CUGGCGCG--------ACGCCG--------AGUUCCc -5'
25040 5' -59 NC_005336.1 + 14692 0.66 0.770699
Target:  5'- ---uGGGCgGCgGCaGCGGCUCGAGGu -3'
miRNA:   3'- uagcUCUGgCG-CGaCGCCGAGUUCCc -5'
25040 5' -59 NC_005336.1 + 68580 0.66 0.770699
Target:  5'- -gCGGcGGCCGCGCgaGUGGCcgcCGAGGa -3'
miRNA:   3'- uaGCU-CUGGCGCGa-CGCCGa--GUUCCc -5'
25040 5' -59 NC_005336.1 + 133358 0.66 0.770699
Target:  5'- -aCGGGcGCUGCGCUcGCGGCgUCGuGGa -3'
miRNA:   3'- uaGCUC-UGGCGCGA-CGCCG-AGUuCCc -5'
25040 5' -59 NC_005336.1 + 43695 0.66 0.770699
Target:  5'- -cCGAGGCCGCGCguUGCGGg-CGcuGGc -3'
miRNA:   3'- uaGCUCUGGCGCG--ACGCCgaGUucCC- -5'
25040 5' -59 NC_005336.1 + 29075 0.66 0.76977
Target:  5'- -gCGAcaagggcGACCGCGCcggucGCGGCgacggCAAGGa -3'
miRNA:   3'- uaGCU-------CUGGCGCGa----CGCCGa----GUUCCc -5'
25040 5' -59 NC_005336.1 + 67358 0.66 0.765108
Target:  5'- uUCGAGACUGUGaucCGGCgcagccgccgcuucgUCGAGGGc -3'
miRNA:   3'- uAGCUCUGGCGCgacGCCG---------------AGUUCCC- -5'
25040 5' -59 NC_005336.1 + 27704 0.66 0.761356
Target:  5'- gAUCuucAUCGUGCUGCGGCgcuUCGAGGa -3'
miRNA:   3'- -UAGcucUGGCGCGACGCCG---AGUUCCc -5'
25040 5' -59 NC_005336.1 + 72308 0.66 0.761356
Target:  5'- -aCGGcGugCGCGUgauccGCGagguGCUCAAGGGg -3'
miRNA:   3'- uaGCU-CugGCGCGa----CGC----CGAGUUCCC- -5'
25040 5' -59 NC_005336.1 + 30662 0.66 0.761356
Target:  5'- uUCGAcGugCgcaagaagugGCGCUGCGuGCucuUCAAGGGc -3'
miRNA:   3'- uAGCU-CugG----------CGCGACGC-CG---AGUUCCC- -5'
25040 5' -59 NC_005336.1 + 29374 0.66 0.760416
Target:  5'- cUUGGGcacgcgcGCCGCGCUgcgcaucaGCGGCUcCGAGGc -3'
miRNA:   3'- uAGCUC-------UGGCGCGA--------CGCCGA-GUUCCc -5'
25040 5' -59 NC_005336.1 + 22996 0.66 0.742343
Target:  5'- -cCGAGACCGCGCUcuggaGCaGC-CGucuGGGc -3'
miRNA:   3'- uaGCUCUGGCGCGA-----CGcCGaGUu--CCC- -5'
25040 5' -59 NC_005336.1 + 99759 0.66 0.742343
Target:  5'- -gCGAGGagGCGCUGCGGCUgcuGGu -3'
miRNA:   3'- uaGCUCUggCGCGACGCCGAguuCCc -5'
25040 5' -59 NC_005336.1 + 90674 0.66 0.742343
Target:  5'- -gCGAGACCGCGacgGCGGUgugCcGGcGGc -3'
miRNA:   3'- uaGCUCUGGCGCga-CGCCGa--GuUC-CC- -5'
25040 5' -59 NC_005336.1 + 45273 0.66 0.742343
Target:  5'- -gUGGGcGCCGUGCUGCuGCUCGGGc- -3'
miRNA:   3'- uaGCUC-UGGCGCGACGcCGAGUUCcc -5'
25040 5' -59 NC_005336.1 + 76039 0.66 0.732691
Target:  5'- -aUGAGGCCcUGCUgcGCGGaCUCGAGGu -3'
miRNA:   3'- uaGCUCUGGcGCGA--CGCC-GAGUUCCc -5'
25040 5' -59 NC_005336.1 + 131020 0.66 0.732691
Target:  5'- gGUCGuggacacgccGGAgCGCuGCUGCGGCUCGAc-- -3'
miRNA:   3'- -UAGC----------UCUgGCG-CGACGCCGAGUUccc -5'
25040 5' -59 NC_005336.1 + 70897 0.67 0.726859
Target:  5'- cAUCGAGACCGgGCagacCGuGCUCAcggacgugcucgacaAGGGc -3'
miRNA:   3'- -UAGCUCUGGCgCGac--GC-CGAGU---------------UCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.