miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 3' -53.2 NC_005336.1 + 44501 0.67 0.951645
Target:  5'- gCCGUg-GGcgCGGgcuaugcagacccGGACCCCGGCGUg -3'
miRNA:   3'- -GGUAgaCCuaGUU-------------UCUGGGGUCGCGg -5'
25041 3' -53.2 NC_005336.1 + 118377 0.67 0.947815
Target:  5'- ---cCUGGAUggcggcagCGAAGGCCUCgaAGUGCCg -3'
miRNA:   3'- gguaGACCUA--------GUUUCUGGGG--UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 35841 0.67 0.947815
Target:  5'- -uGUCcGcGAUCuugGAGGuCUCCAGCGCCu -3'
miRNA:   3'- ggUAGaC-CUAGu--UUCU-GGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 101392 0.67 0.943329
Target:  5'- gCAcuUCcGGAcgCAGAGACgCCAGCGgCa -3'
miRNA:   3'- gGU--AGaCCUa-GUUUCUGgGGUCGCgG- -5'
25041 3' -53.2 NC_005336.1 + 64392 0.67 0.943329
Target:  5'- uUCAUCuUGGA-CAugaccuggaacGAGGCCUCGcuGCGCCa -3'
miRNA:   3'- -GGUAG-ACCUaGU-----------UUCUGGGGU--CGCGG- -5'
25041 3' -53.2 NC_005336.1 + 125174 0.67 0.943329
Target:  5'- uCCAugcUCUGcGAcugccggccgUC--GGACCCgCGGCGCCg -3'
miRNA:   3'- -GGU---AGAC-CU----------AGuuUCUGGG-GUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 102029 0.67 0.943329
Target:  5'- cCCAUCgUGGccagcAUCAAGGGCCaCagcuacgaAGCGCUg -3'
miRNA:   3'- -GGUAG-ACC-----UAGUUUCUGG-Gg-------UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 99513 0.67 0.943329
Target:  5'- gCCG-CUGGAUagcGGACCgC-GCGCCu -3'
miRNA:   3'- -GGUaGACCUAguuUCUGGgGuCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 11204 0.67 0.943329
Target:  5'- gCGUCUauGAUCcGAGGCCaguacuccaCGGCGCCg -3'
miRNA:   3'- gGUAGAc-CUAGuUUCUGGg--------GUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 55769 0.67 0.943329
Target:  5'- gCCGgagcCUGGccaGAAGACCUUcucgGGCGCCg -3'
miRNA:   3'- -GGUa---GACCuagUUUCUGGGG----UCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 99594 0.67 0.938599
Target:  5'- uUCGUCUGcGGcgugcUCAAGGGCCgCGcgcugcGCGCCg -3'
miRNA:   3'- -GGUAGAC-CU-----AGUUUCUGGgGU------CGCGG- -5'
25041 3' -53.2 NC_005336.1 + 58372 0.68 0.935644
Target:  5'- aCGUCUGGuucgcggcguacucgGUCGAGcucGACCCgccgCGGCGCUg -3'
miRNA:   3'- gGUAGACC---------------UAGUUU---CUGGG----GUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 104366 0.68 0.933624
Target:  5'- aCUAUaaaUGGAgUCGcGAGACCUgGGCGUCg -3'
miRNA:   3'- -GGUAg--ACCU-AGU-UUCUGGGgUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 75629 0.68 0.92293
Target:  5'- gCGcCUGGGUCccAGAgCCgacgCAGCGCCg -3'
miRNA:   3'- gGUaGACCUAGuuUCUgGG----GUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 53382 0.68 0.92293
Target:  5'- aCCGUCUuccaGGucuUCAacGAGACCUCGGuCGCg -3'
miRNA:   3'- -GGUAGA----CCu--AGU--UUCUGGGGUC-GCGg -5'
25041 3' -53.2 NC_005336.1 + 28955 0.68 0.917212
Target:  5'- cCCGUCagGGAagcgcugcgCAGcgcAGACCuguCCGGCGCCg -3'
miRNA:   3'- -GGUAGa-CCUa--------GUU---UCUGG---GGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 83550 0.68 0.917212
Target:  5'- uUAUCgGGGUCGc--GCUCCAGCGUCu -3'
miRNA:   3'- gGUAGaCCUAGUuucUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 64502 0.68 0.911247
Target:  5'- gCAcuUCgUGG-UCGcgcgccAGGACUCCGGCGCCg -3'
miRNA:   3'- gGU--AG-ACCuAGU------UUCUGGGGUCGCGG- -5'
25041 3' -53.2 NC_005336.1 + 13237 0.68 0.911247
Target:  5'- cCCAUCUGcGcgCAGAGcucaACCgCAGUGaCCa -3'
miRNA:   3'- -GGUAGAC-CuaGUUUC----UGGgGUCGC-GG- -5'
25041 3' -53.2 NC_005336.1 + 109803 0.68 0.905037
Target:  5'- aCCGUCUGccacgcCAucGACCCC-GCGCUc -3'
miRNA:   3'- -GGUAGACcua---GUuuCUGGGGuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.