miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25041 5' -56.9 NC_005336.1 + 5805 0.66 0.877501
Target:  5'- aCGGCgcaggcgGCCGAGGccgGCgccgCgCGCGCGGCc -3'
miRNA:   3'- gGCUG-------UGGCUCCa--CGa---GaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 75287 0.66 0.87105
Target:  5'- gCGGCGCCGGaGUcCUggCGCGCGACc -3'
miRNA:   3'- gGCUGUGGCUcCAcGAgaGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 100452 0.66 0.87105
Target:  5'- gCGGcCGCCGaAGG-GCUCggGCACGuACa -3'
miRNA:   3'- gGCU-GUGGC-UCCaCGAGagCGUGC-UG- -5'
25041 5' -56.9 NC_005336.1 + 61759 0.66 0.87105
Target:  5'- gCCGAUGCgGucGUGCUCgaccucagCGCGCG-Ca -3'
miRNA:   3'- -GGCUGUGgCucCACGAGa-------GCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 80973 0.66 0.87105
Target:  5'- -aGGCugCGcAGGgcgcGCUCgCGCGCGAa -3'
miRNA:   3'- ggCUGugGC-UCCa---CGAGaGCGUGCUg -5'
25041 5' -56.9 NC_005336.1 + 75144 0.66 0.87105
Target:  5'- gUCGAgCGCCGGgaagcGGcGCUCggGCGCGGCu -3'
miRNA:   3'- -GGCU-GUGGCU-----CCaCGAGagCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 3441 0.66 0.870323
Target:  5'- gCCGACggucaggcaggucACCGAGGcggaGCcgUUCGCGCgGACg -3'
miRNA:   3'- -GGCUG-------------UGGCUCCa---CGa-GAGCGUG-CUG- -5'
25041 5' -56.9 NC_005336.1 + 3441 0.66 0.870323
Target:  5'- gCCGACggucaggcaggucACCGAGGcggaGCcgUUCGCGCgGACg -3'
miRNA:   3'- -GGCUG-------------UGGCUCCa---CGa-GAGCGUG-CUG- -5'
25041 5' -56.9 NC_005336.1 + 77690 0.66 0.863685
Target:  5'- gCGGCgGCCuuGGUGCgCUCGCGC-ACg -3'
miRNA:   3'- gGCUG-UGGcuCCACGaGAGCGUGcUG- -5'
25041 5' -56.9 NC_005336.1 + 77869 0.66 0.863685
Target:  5'- gCCGGCACCucugcGAccucuucccGGcgcUGCUCaacgCGCGCGACg -3'
miRNA:   3'- -GGCUGUGG-----CU---------CC---ACGAGa---GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 118207 0.66 0.863685
Target:  5'- aCGGCgcGCUGAGGgcGCUCacCGCGCuGACg -3'
miRNA:   3'- gGCUG--UGGCUCCa-CGAGa-GCGUG-CUG- -5'
25041 5' -56.9 NC_005336.1 + 30236 0.66 0.856116
Target:  5'- -aGAUGCCGcGGGUGCUCUUG-AgGGCc -3'
miRNA:   3'- ggCUGUGGC-UCCACGAGAGCgUgCUG- -5'
25041 5' -56.9 NC_005336.1 + 44371 0.66 0.856116
Target:  5'- uCgGGCACCaAGGgccuaaugUGCcgCUUGCGCGGCa -3'
miRNA:   3'- -GgCUGUGGcUCC--------ACGa-GAGCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 121713 0.66 0.856116
Target:  5'- -gGACGCC--GGUGCUggacCUCGCGCG-Cg -3'
miRNA:   3'- ggCUGUGGcuCCACGA----GAGCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 95853 0.66 0.856116
Target:  5'- gCGGCGCCGAGGcGCcuaUCUCGaaCAC-ACa -3'
miRNA:   3'- gGCUGUGGCUCCaCG---AGAGC--GUGcUG- -5'
25041 5' -56.9 NC_005336.1 + 69159 0.66 0.856116
Target:  5'- gUGACGCUGGuGGUGggCUuccaccccgcggCGCGCGACg -3'
miRNA:   3'- gGCUGUGGCU-CCACgaGA------------GCGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 48428 0.66 0.855348
Target:  5'- gUGACGCUcauggacagccugGAGGUGCUCacuaccUCagGCGCGACc -3'
miRNA:   3'- gGCUGUGG-------------CUCCACGAG------AG--CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 14511 0.66 0.853806
Target:  5'- uCCGGCcggaaccCCGAGGUGCacucgaUCUCgagcuccgcgcccgGCACGAUc -3'
miRNA:   3'- -GGCUGu------GGCUCCACG------AGAG--------------CGUGCUG- -5'
25041 5' -56.9 NC_005336.1 + 15970 0.67 0.848348
Target:  5'- cCCGAgGCCaagugcGAGG-GCUCgCGCGCGuCc -3'
miRNA:   3'- -GGCUgUGG------CUCCaCGAGaGCGUGCuG- -5'
25041 5' -56.9 NC_005336.1 + 50204 0.67 0.848348
Target:  5'- gCCGGCGgCGAGGUGaua-CGCGCcggGACg -3'
miRNA:   3'- -GGCUGUgGCUCCACgagaGCGUG---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.