miRNA display CGI


Results 41 - 60 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 49790 0.66 0.865865
Target:  5'- gCAUCGcgaGCGCGCGCuCCGAgaaGCaGCUc -3'
miRNA:   3'- aGUAGC---UGCGUGCGuGGCUg--CG-CGAu -5'
25042 3' -57.1 NC_005336.1 + 21351 0.66 0.865115
Target:  5'- gUCuUCGACGC-CGUGCucaaggcagccuuCGACGCGCc- -3'
miRNA:   3'- -AGuAGCUGCGuGCGUG-------------GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 42212 0.66 0.849678
Target:  5'- uUCGcgCGGCGguaccCGCGCACCGcggccgccguggaGCGCGCg- -3'
miRNA:   3'- -AGUa-GCUGC-----GUGCGUGGC-------------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 133810 0.66 0.865865
Target:  5'- aCAcgGACGCgACGCugCugGACGUGCUGc -3'
miRNA:   3'- aGUagCUGCG-UGCGugG--CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 83279 0.66 0.850469
Target:  5'- aUCuUCGcugcgaagagcuGCGCACGgGCCGcuggGCGCGCg- -3'
miRNA:   3'- -AGuAGC------------UGCGUGCgUGGC----UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40584 0.66 0.850469
Target:  5'- gCGUCuuGCGCAugagcCGCGCgGGCGCGCc- -3'
miRNA:   3'- aGUAGc-UGCGU-----GCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 97301 0.66 0.842471
Target:  5'- ----aGugGCGCGCgGCCGugGCGgaGc -3'
miRNA:   3'- aguagCugCGUGCG-UGGCugCGCgaU- -5'
25042 3' -57.1 NC_005336.1 + 97952 0.66 0.842471
Target:  5'- -gGUC-ACGCGCGCACUG-CGCGaCa- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGCuGCGC-Gau -5'
25042 3' -57.1 NC_005336.1 + 6611 0.66 0.842471
Target:  5'- cCA-CGGCGCGugcgucUGCGCCcGCGCGCa- -3'
miRNA:   3'- aGUaGCUGCGU------GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 75350 0.66 0.841661
Target:  5'- gUCAucUCGugGCuguucagGCGCACCG-CGCGg-- -3'
miRNA:   3'- -AGU--AGCugCG-------UGCGUGGCuGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 118672 0.66 0.865865
Target:  5'- gCAgccCGcCGUGCaCGCCGGCGCGCa- -3'
miRNA:   3'- aGUa--GCuGCGUGcGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 125794 0.66 0.861332
Target:  5'- gCAUCGAgaCGCACGuCGCgGaggggaaccucgaucGCGCGCUc -3'
miRNA:   3'- aGUAGCU--GCGUGC-GUGgC---------------UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 102587 0.66 0.865865
Target:  5'- -gAUCGA-GCGCGC-CgGGCgGCGCUAc -3'
miRNA:   3'- agUAGCUgCGUGCGuGgCUG-CGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 80610 0.66 0.842471
Target:  5'- -gAUCuGCGCgGCGCGCUuGCGCGCg- -3'
miRNA:   3'- agUAGcUGCG-UGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 74407 0.66 0.850469
Target:  5'- --cUCGugGuCGCGUGCCGGCGcCGgUAc -3'
miRNA:   3'- aguAGCugC-GUGCGUGGCUGC-GCgAU- -5'
25042 3' -57.1 NC_005336.1 + 21843 0.66 0.850469
Target:  5'- ---cUGaACGCGCGCgugGCCGACGaCGCg- -3'
miRNA:   3'- aguaGC-UGCGUGCG---UGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 95468 0.66 0.858269
Target:  5'- gCAcUCG-UGCGCGCGgCaGACGCGCg- -3'
miRNA:   3'- aGU-AGCuGCGUGCGUgG-CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 29817 0.66 0.865865
Target:  5'- uUCAUCGu--C-CGCGgCGACGCGCUc -3'
miRNA:   3'- -AGUAGCugcGuGCGUgGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 44905 0.66 0.850469
Target:  5'- ----aGACGCAUaGCGCCuuacGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUG-CGUGG----CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 10139 0.66 0.842471
Target:  5'- -aGUCGGCGCuCGCGgCGGUGUGCa- -3'
miRNA:   3'- agUAGCUGCGuGCGUgGCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.