miRNA display CGI


Results 61 - 80 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 42212 0.66 0.849678
Target:  5'- uUCGcgCGGCGguaccCGCGCACCGcggccgccguggaGCGCGCg- -3'
miRNA:   3'- -AGUa-GCUGC-----GUGCGUGGC-------------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 80610 0.66 0.842471
Target:  5'- -gAUCuGCGCgGCGCGCUuGCGCGCg- -3'
miRNA:   3'- agUAGcUGCG-UGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 44116 0.66 0.85595
Target:  5'- gCGUUuguGCGCggaGCGCucgcggccgaguggGCCGACGCGCUGc -3'
miRNA:   3'- aGUAGc--UGCG---UGCG--------------UGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 68837 0.66 0.865865
Target:  5'- gCAUCGAcccguaccCGCGCgGCGgcCCGGCGUGCc- -3'
miRNA:   3'- aGUAGCU--------GCGUG-CGU--GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 109738 0.66 0.865865
Target:  5'- uUCG-CGcucACGUGCGCGCCGuggacggccuGCGCGCa- -3'
miRNA:   3'- -AGUaGC---UGCGUGCGUGGC----------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 16124 0.66 0.858269
Target:  5'- gCGUCcGCGCGCGuCGCgCGACGUGg-- -3'
miRNA:   3'- aGUAGcUGCGUGC-GUG-GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 29817 0.66 0.865865
Target:  5'- uUCAUCGu--C-CGCGgCGACGCGCUc -3'
miRNA:   3'- -AGUAGCugcGuGCGUgGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 27181 0.66 0.858269
Target:  5'- cUCcgCGAaGCACGCGCCGGgguUGuCGCa- -3'
miRNA:   3'- -AGuaGCUgCGUGCGUGGCU---GC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 49790 0.66 0.865865
Target:  5'- gCAUCGcgaGCGCGCGCuCCGAgaaGCaGCUc -3'
miRNA:   3'- aGUAGC---UGCGUGCGuGGCUg--CG-CGAu -5'
25042 3' -57.1 NC_005336.1 + 117135 0.66 0.865865
Target:  5'- cUCA-CGAC-CGCGCGCaCGACGCcgggaacgcagGCUGg -3'
miRNA:   3'- -AGUaGCUGcGUGCGUG-GCUGCG-----------CGAU- -5'
25042 3' -57.1 NC_005336.1 + 133810 0.66 0.865865
Target:  5'- aCAcgGACGCgACGCugCugGACGUGCUGc -3'
miRNA:   3'- aGUagCUGCG-UGCGugG--CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 21351 0.66 0.865115
Target:  5'- gUCuUCGACGC-CGUGCucaaggcagccuuCGACGCGCc- -3'
miRNA:   3'- -AGuAGCUGCGuGCGUG-------------GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 76383 0.66 0.850469
Target:  5'- cUCGUCGAUGacCACGCA--GACGCgGCUGc -3'
miRNA:   3'- -AGUAGCUGC--GUGCGUggCUGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 74407 0.66 0.850469
Target:  5'- --cUCGugGuCGCGUGCCGGCGcCGgUAc -3'
miRNA:   3'- aguAGCugC-GUGCGUGGCUGC-GCgAU- -5'
25042 3' -57.1 NC_005336.1 + 74825 0.66 0.850469
Target:  5'- gCGUgGGCGUgaugGCGCgGCUGGCGCGUUc -3'
miRNA:   3'- aGUAgCUGCG----UGCG-UGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 124414 0.66 0.850469
Target:  5'- cUCGUgGACGCGguguCGCGucucguguguCCGuGCGCGCUGc -3'
miRNA:   3'- -AGUAgCUGCGU----GCGU----------GGC-UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 58497 0.66 0.850469
Target:  5'- cCAgggCGcGCGCGCGCGCUcGCGgGCUu -3'
miRNA:   3'- aGUa--GC-UGCGUGCGUGGcUGCgCGAu -5'
25042 3' -57.1 NC_005336.1 + 59183 0.66 0.850469
Target:  5'- aCAU--GCGCGCGCGCaaGCGCGCc- -3'
miRNA:   3'- aGUAgcUGCGUGCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 48122 0.66 0.858269
Target:  5'- cUCAaCGuGCGCGCGCugcucACCGACGC-CUc -3'
miRNA:   3'- -AGUaGC-UGCGUGCG-----UGGCUGCGcGAu -5'
25042 3' -57.1 NC_005336.1 + 61963 0.66 0.865865
Target:  5'- aCGUgG-UGCACGCGCUG-CGCGUg- -3'
miRNA:   3'- aGUAgCuGCGUGCGUGGCuGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.