miRNA display CGI


Results 101 - 120 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 44826 0.67 0.781572
Target:  5'- aCG-CGGgGCGCGUggACCG-CGCGCUGc -3'
miRNA:   3'- aGUaGCUgCGUGCG--UGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 52328 0.67 0.781572
Target:  5'- -gAUCGcggGCGCGCGCGaauaCGACGCGg-- -3'
miRNA:   3'- agUAGC---UGCGUGCGUg---GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 52563 0.67 0.781572
Target:  5'- cUCAUCGACGgGCGCAagcaCGACcccugucucucgGgGCUGc -3'
miRNA:   3'- -AGUAGCUGCgUGCGUg---GCUG------------CgCGAU- -5'
25042 3' -57.1 NC_005336.1 + 88900 0.67 0.781572
Target:  5'- --uUCGugGCGCugguGCugCGAgGCGCg- -3'
miRNA:   3'- aguAGCugCGUG----CGugGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 18720 0.67 0.781572
Target:  5'- aCGUCGgggaaguucugGCGCACGCAggccUCGGCGaCGCg- -3'
miRNA:   3'- aGUAGC-----------UGCGUGCGU----GGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 123207 0.67 0.781572
Target:  5'- aCGUCGugGaCGCGCugcuggacGCCGGCGCa--- -3'
miRNA:   3'- aGUAGCugC-GUGCG--------UGGCUGCGcgau -5'
25042 3' -57.1 NC_005336.1 + 63912 0.67 0.77133
Target:  5'- uUCAUCGACGaccaccuCGCcuccggcagcgagGCCGAgGCGCa- -3'
miRNA:   3'- -AGUAGCUGCgu-----GCG-------------UGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 3512 0.67 0.769452
Target:  5'- gCAgcggCGGCGCcgcggggcggaagaGCGCGCCGA-GCGCg- -3'
miRNA:   3'- aGUa---GCUGCG--------------UGCGUGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 10030 0.67 0.789831
Target:  5'- uUCGUCGcgauggaguucagGCGCACgGUGCCGuCGCuGCUGa -3'
miRNA:   3'- -AGUAGC-------------UGCGUG-CGUGGCuGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 80359 0.67 0.799769
Target:  5'- gUCcgCGGCGCGCaGCGCCaGC-CGCUc -3'
miRNA:   3'- -AGuaGCUGCGUG-CGUGGcUGcGCGAu -5'
25042 3' -57.1 NC_005336.1 + 46388 0.67 0.799769
Target:  5'- --cUCGAacaCGCGCGCGCCcGCGCGg-- -3'
miRNA:   3'- aguAGCU---GCGUGCGUGGcUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 109489 0.67 0.817362
Target:  5'- -uGUCcaGGCGCGCGCggcaGCCGAagaaGCGCg- -3'
miRNA:   3'- agUAG--CUGCGUGCG----UGGCUg---CGCGau -5'
25042 3' -57.1 NC_005336.1 + 95523 0.67 0.817362
Target:  5'- ---gCGACGCaaGCGCAcuCCGGCGCGg-- -3'
miRNA:   3'- aguaGCUGCG--UGCGU--GGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 43608 0.67 0.817362
Target:  5'- cCA-CGcuCGCGCGCGCUGGCGaCGCc- -3'
miRNA:   3'- aGUaGCu-GCGUGCGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 3310 0.67 0.817362
Target:  5'- gUCG-CGACGUgcagcagcaGCGCGCCcuuGCGCGCg- -3'
miRNA:   3'- -AGUaGCUGCG---------UGCGUGGc--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 12418 0.67 0.799769
Target:  5'- cUUGUCGGCGCGCG-GCC-ACGCGUc- -3'
miRNA:   3'- -AGUAGCUGCGUGCgUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 131835 0.67 0.799769
Target:  5'- cCA-CGugGCGguCGCCGGCGCGUUGu -3'
miRNA:   3'- aGUaGCugCGUgcGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 11098 0.67 0.812152
Target:  5'- gUCGUCGAggcUGCGCGCGgCCGAgaccgacagcgggucCGCGUUc -3'
miRNA:   3'- -AGUAGCU---GCGUGCGU-GGCU---------------GCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 22226 0.67 0.808646
Target:  5'- uUCAgcgcaGACGCGCgGCugCGAgaGCGCUu -3'
miRNA:   3'- -AGUag---CUGCGUG-CGugGCUg-CGCGAu -5'
25042 3' -57.1 NC_005336.1 + 67870 0.67 0.790742
Target:  5'- cCA-CGccaGCGC-CGCGCCGACGCGg-- -3'
miRNA:   3'- aGUaGC---UGCGuGCGUGGCUGCGCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.