miRNA display CGI


Results 21 - 40 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 41170 0.76 0.330033
Target:  5'- cUCcgCGcgcuuCGCGCGCugCGGCGCGCg- -3'
miRNA:   3'- -AGuaGCu----GCGUGCGugGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 130603 0.76 0.333027
Target:  5'- cCAUCGcucgcgacugguggaGCGCGCGCugCG-CGCGCUGc -3'
miRNA:   3'- aGUAGC---------------UGCGUGCGugGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 68369 0.76 0.337555
Target:  5'- --uUCGACGCGCggGCGCCGGCggccGCGCUGu -3'
miRNA:   3'- aguAGCUGCGUG--CGUGGCUG----CGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 50748 0.76 0.337555
Target:  5'- uUCAaCGugGUgccGCGCACCauGACGCGCUAc -3'
miRNA:   3'- -AGUaGCugCG---UGCGUGG--CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 99519 0.75 0.352972
Target:  5'- gCG-CGGCGCGC-CGCCGGCGCGCc- -3'
miRNA:   3'- aGUaGCUGCGUGcGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 21116 0.75 0.368881
Target:  5'- cCGUUG-CGCuuGCGCGCCGGCGUGCa- -3'
miRNA:   3'- aGUAGCuGCG--UGCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 11655 0.75 0.368881
Target:  5'- gUCGUCGGCgGCGCGC-CCaGGCGCGUg- -3'
miRNA:   3'- -AGUAGCUG-CGUGCGuGG-CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 125934 0.75 0.377018
Target:  5'- gUCG-CGGCGCcgccguGCGaCACCGACGUGCUGc -3'
miRNA:   3'- -AGUaGCUGCG------UGC-GUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 92485 0.75 0.360866
Target:  5'- uUCAUcucCGGCGUGCGCACCGGCG-GCg- -3'
miRNA:   3'- -AGUA---GCUGCGUGCGUGGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 113449 0.75 0.368881
Target:  5'- cUCcgCGGCGCGCGCGCCcGGCGaccgcgucaCGCUGg -3'
miRNA:   3'- -AGuaGCUGCGUGCGUGG-CUGC---------GCGAU- -5'
25042 3' -57.1 NC_005336.1 + 78156 0.75 0.345202
Target:  5'- gCGUcCGGCGCGCGCGCgGGCGUGgUGg -3'
miRNA:   3'- aGUA-GCUGCGUGCGUGgCUGCGCgAU- -5'
25042 3' -57.1 NC_005336.1 + 49947 0.75 0.345202
Target:  5'- -gGUCGGCGCAgCGCAUCuGCGCGCa- -3'
miRNA:   3'- agUAGCUGCGU-GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 14888 0.75 0.352972
Target:  5'- gUCGUCGcGCGCGCGCcuCCGGCGCaGUUGg -3'
miRNA:   3'- -AGUAGC-UGCGUGCGu-GGCUGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 66671 0.75 0.360866
Target:  5'- ---cCGACGCACGCGCgGGC-CGCUGg -3'
miRNA:   3'- aguaGCUGCGUGCGUGgCUGcGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 60897 0.75 0.345202
Target:  5'- cCGUCGGCcuaGCGCGCGgCGGCGUGCg- -3'
miRNA:   3'- aGUAGCUG---CGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 99369 0.74 0.402142
Target:  5'- gCGUCGcGCGCACGCugCGuguGCGCGUg- -3'
miRNA:   3'- aGUAGC-UGCGUGCGugGC---UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 41847 0.74 0.402142
Target:  5'- cCGUC-ACGCGCGCG-CGGCGCGCg- -3'
miRNA:   3'- aGUAGcUGCGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 105484 0.74 0.41075
Target:  5'- aCG-CGGgGCugGCugCGACGCGCa- -3'
miRNA:   3'- aGUaGCUgCGugCGugGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 109376 0.74 0.418594
Target:  5'- uUCGUCGGCGCGgagcuCGCGCagcuccgCGGCGCGCa- -3'
miRNA:   3'- -AGUAGCUGCGU-----GCGUG-------GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 47413 0.74 0.428304
Target:  5'- gUCGgcgaCGACGCGCGCAUgGcCGUGCUGa -3'
miRNA:   3'- -AGUa---GCUGCGUGCGUGgCuGCGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.