miRNA display CGI


Results 41 - 60 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 76031 0.74 0.402142
Target:  5'- aCAUCauGCGCACGCGCUuGCGCGCg- -3'
miRNA:   3'- aGUAGc-UGCGUGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 99369 0.74 0.402142
Target:  5'- gCGUCGcGCGCACGCugCGuguGCGCGUg- -3'
miRNA:   3'- aGUAGC-UGCGUGCGugGC---UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 67546 0.74 0.428304
Target:  5'- gCGUCGauuccGCGCcCGCGCCGGCGCGgaAg -3'
miRNA:   3'- aGUAGC-----UGCGuGCGUGGCUGCGCgaU- -5'
25042 3' -57.1 NC_005336.1 + 47413 0.74 0.428304
Target:  5'- gUCGgcgaCGACGCGCGCAUgGcCGUGCUGa -3'
miRNA:   3'- -AGUa---GCUGCGUGCGUGgCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 109376 0.74 0.418594
Target:  5'- uUCGUCGGCGCGgagcuCGCGCagcuccgCGGCGCGCa- -3'
miRNA:   3'- -AGUAGCUGCGU-----GCGUG-------GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 45844 0.74 0.41075
Target:  5'- cCggCGACGUggauugcguggGCgGCGCCGGCGCGCUGg -3'
miRNA:   3'- aGuaGCUGCG-----------UG-CGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 105484 0.74 0.41075
Target:  5'- aCG-CGGgGCugGCugCGACGCGCa- -3'
miRNA:   3'- aGUaGCUgCGugCGugGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 41847 0.74 0.402142
Target:  5'- cCGUC-ACGCGCGCG-CGGCGCGCg- -3'
miRNA:   3'- aGUAGcUGCGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 23903 0.74 0.402142
Target:  5'- gUCGUCGGgGCGCGCGCgGccGCGgGCUGc -3'
miRNA:   3'- -AGUAGCUgCGUGCGUGgC--UGCgCGAU- -5'
25042 3' -57.1 NC_005336.1 + 6006 0.74 0.402142
Target:  5'- gUCcgUGugGCAgCGCACCG-CGCGCa- -3'
miRNA:   3'- -AGuaGCugCGU-GCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 10389 0.73 0.437246
Target:  5'- -gGUCcACGCGCGCGCCGgcguccagcaGCGCGCg- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGC----------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 73786 0.73 0.437246
Target:  5'- --cUCGACGCGCGCGCacaCGcCGCGCa- -3'
miRNA:   3'- aguAGCUGCGUGCGUG---GCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 49724 0.73 0.446294
Target:  5'- cCAUCaACGC-CGCGCUgaaGACGCGCUAc -3'
miRNA:   3'- aGUAGcUGCGuGCGUGG---CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 40258 0.73 0.435449
Target:  5'- cCAcgCGGCGCACGCGCacgaagcaucgaGGCGCGCg- -3'
miRNA:   3'- aGUa-GCUGCGUGCGUGg-----------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 75223 0.73 0.464697
Target:  5'- cCGUCuACGaCGCGCGCCGccACGCGCa- -3'
miRNA:   3'- aGUAGcUGC-GUGCGUGGC--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 50288 0.73 0.455445
Target:  5'- gUCGgccgCGAUGCccuGCGCGCgGGCGCGCg- -3'
miRNA:   3'- -AGUa---GCUGCG---UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 30662 0.73 0.474045
Target:  5'- --uUCGACGUGCGCAagaaGugGCGCUGc -3'
miRNA:   3'- aguAGCUGCGUGCGUgg--CugCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 48109 0.73 0.446294
Target:  5'- -gGUCGcggcuGCGCAugcggUGCGCCGGCGCGCUu -3'
miRNA:   3'- agUAGC-----UGCGU-----GCGUGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 120233 0.73 0.455445
Target:  5'- cUCG-CGGCG-GCGCugCGGCGCGCUc -3'
miRNA:   3'- -AGUaGCUGCgUGCGugGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 74343 0.73 0.446294
Target:  5'- gCAcCGGCGCAUugaccgGCACCGGCGCGUc- -3'
miRNA:   3'- aGUaGCUGCGUG------CGUGGCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.