miRNA display CGI


Results 61 - 80 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 48109 0.73 0.446294
Target:  5'- -gGUCGcggcuGCGCAugcggUGCGCCGGCGCGCUu -3'
miRNA:   3'- agUAGC-----UGCGU-----GCGUGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 30662 0.73 0.474045
Target:  5'- --uUCGACGUGCGCAagaaGugGCGCUGc -3'
miRNA:   3'- aguAGCUGCGUGCGUgg--CugCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 75223 0.73 0.464697
Target:  5'- cCGUCuACGaCGCGCGCCGccACGCGCa- -3'
miRNA:   3'- aGUAGcUGC-GUGCGUGGC--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 120233 0.73 0.455445
Target:  5'- cUCG-CGGCG-GCGCugCGGCGCGCUc -3'
miRNA:   3'- -AGUaGCUGCgUGCGugGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 78891 0.72 0.502635
Target:  5'- -gGUCcauGCGCACGcCGCCG-CGCGCUAg -3'
miRNA:   3'- agUAGc--UGCGUGC-GUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 61088 0.72 0.531952
Target:  5'- -gAUCGAcgucauCGCGCGCAUgGACGUGCg- -3'
miRNA:   3'- agUAGCU------GCGUGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 11527 0.72 0.493019
Target:  5'- aCuugCGGCGCACGCGCuCcACGCGCg- -3'
miRNA:   3'- aGua-GCUGCGUGCGUG-GcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 124919 0.72 0.493019
Target:  5'- ----aGGCGCGCGCGCgaCGACGUGCUc -3'
miRNA:   3'- aguagCUGCGUGCGUG--GCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 88388 0.72 0.522107
Target:  5'- gUCGUCGGCGC-CGCcauCCGAuuuauCGCGCa- -3'
miRNA:   3'- -AGUAGCUGCGuGCGu--GGCU-----GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 72198 0.72 0.519167
Target:  5'- cUAUCGACGCGCGCgagaccgcagccugGCUGGCGgaGCUGu -3'
miRNA:   3'- aGUAGCUGCGUGCG--------------UGGCUGCg-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 62716 0.72 0.522107
Target:  5'- --cUCGACGCcguggagcgGCGCACgCGGCGCGUg- -3'
miRNA:   3'- aguAGCUGCG---------UGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 55050 0.72 0.522107
Target:  5'- cUCcUCcACGCGCGCGgUGACGCGUUGa -3'
miRNA:   3'- -AGuAGcUGCGUGCGUgGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 56156 0.72 0.51136
Target:  5'- cCGaUGGCGCcCGCggacgaaGCCGACGCGCUGg -3'
miRNA:   3'- aGUaGCUGCGuGCG-------UGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 104671 0.72 0.522107
Target:  5'- aCAUCGAguuCGCGCgGCGCUGcuACGCGCUc -3'
miRNA:   3'- aGUAGCU---GCGUG-CGUGGC--UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 100712 0.72 0.493019
Target:  5'- aCAUCG-CGCACaGCGCCGAgGCGg-- -3'
miRNA:   3'- aGUAGCuGCGUG-CGUGGCUgCGCgau -5'
25042 3' -57.1 NC_005336.1 + 3940 0.72 0.502635
Target:  5'- gCcgCGGCGCA-GCGCCG-CGCGCa- -3'
miRNA:   3'- aGuaGCUGCGUgCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 134357 0.72 0.522107
Target:  5'- cUCGcgcgCGugGCGacCGCGCUGACGCGCc- -3'
miRNA:   3'- -AGUa---GCugCGU--GCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 67817 0.72 0.522107
Target:  5'- ---aCGAUGCACGCGCgCGgGCGCGCc- -3'
miRNA:   3'- aguaGCUGCGUGCGUG-GC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 76781 0.72 0.502635
Target:  5'- -aGUCGAUGUAgGCAgCGuGCGCGCUGg -3'
miRNA:   3'- agUAGCUGCGUgCGUgGC-UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 100878 0.72 0.512333
Target:  5'- uUCG-CGGCGCGCGCGCgguCGGCGCGg-- -3'
miRNA:   3'- -AGUaGCUGCGUGCGUG---GCUGCGCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.