Results 101 - 120 of 397 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25042 | 3' | -57.1 | NC_005336.1 | + | 35466 | 0.7 | 0.653491 |
Target: 5'- -gGUCGGCcuGCACGCGCuCcACGCGCg- -3' miRNA: 3'- agUAGCUG--CGUGCGUG-GcUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 8281 | 0.7 | 0.653491 |
Target: 5'- gCAU-GACGCucGCGCGCgGGCGCGUg- -3' miRNA: 3'- aGUAgCUGCG--UGCGUGgCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 127422 | 0.7 | 0.633047 |
Target: 5'- cCggUGGCGCuCGCGCUGAuCGCGCUc -3' miRNA: 3'- aGuaGCUGCGuGCGUGGCU-GCGCGAu -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 57967 | 0.7 | 0.633047 |
Target: 5'- aCG-CGGCGCugcacaacCGCACCGACGCGg-- -3' miRNA: 3'- aGUaGCUGCGu-------GCGUGGCUGCGCgau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 3734 | 0.7 | 0.62282 |
Target: 5'- gCG-CGGCGgGCGCggugagggaaGCCGGCGCGCg- -3' miRNA: 3'- aGUaGCUGCgUGCG----------UGGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 129189 | 0.7 | 0.602395 |
Target: 5'- ----gGGCGCGCGCGCCGcCGCGg-- -3' miRNA: 3'- aguagCUGCGUGCGUGGCuGCGCgau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 90253 | 0.7 | 0.602395 |
Target: 5'- cUCAgucUCGGgGCcgccGCuGCACCGGCGCGCg- -3' miRNA: 3'- -AGU---AGCUgCG----UG-CGUGGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 40461 | 0.7 | 0.602395 |
Target: 5'- cCGgaggCGGCGCACGCAgCGAgcacuucguCGCGCg- -3' miRNA: 3'- aGUa---GCUGCGUGCGUgGCU---------GCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 101183 | 0.7 | 0.633047 |
Target: 5'- -gGUguGCGCGCGCACCagcguGACGCGCg- -3' miRNA: 3'- agUAgcUGCGUGCGUGG-----CUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 37206 | 0.7 | 0.643274 |
Target: 5'- aCAUCacguaGCGC-CGC-CCGGCGCGCUc -3' miRNA: 3'- aGUAGc----UGCGuGCGuGGCUGCGCGAu -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 124616 | 0.7 | 0.633047 |
Target: 5'- aCAaCGACuGCGCGCgccaggGCCGugGCGCc- -3' miRNA: 3'- aGUaGCUG-CGUGCG------UGGCugCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 49348 | 0.7 | 0.633047 |
Target: 5'- cCAUCGcccGCGCGCGCGugaccagcuCCGGCGcCGCg- -3' miRNA: 3'- aGUAGC---UGCGUGCGU---------GGCUGC-GCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 127920 | 0.7 | 0.62282 |
Target: 5'- aCAaCuGCGCGCGCGCCG-UGCGCa- -3' miRNA: 3'- aGUaGcUGCGUGCGUGGCuGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 7838 | 0.7 | 0.62282 |
Target: 5'- cCGguagCG-CGgAUGCGCCGGCGCGCg- -3' miRNA: 3'- aGUa---GCuGCgUGCGUGGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 31743 | 0.7 | 0.62282 |
Target: 5'- gCGUCGAUGCugaGC-CCGAgGCGCa- -3' miRNA: 3'- aGUAGCUGCGug-CGuGGCUgCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 17280 | 0.7 | 0.62282 |
Target: 5'- gCGUCcACGCGcCGCACCGcUGCGUUGa -3' miRNA: 3'- aGUAGcUGCGU-GCGUGGCuGCGCGAU- -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 16328 | 0.7 | 0.62282 |
Target: 5'- gCAUCGAgCGCACgGCGCCcuccgcggcgggGugGCGCg- -3' miRNA: 3'- aGUAGCU-GCGUG-CGUGG------------CugCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 3734 | 0.7 | 0.62282 |
Target: 5'- gCG-CGGCGgGCGCggugagggaaGCCGGCGCGCg- -3' miRNA: 3'- aGUaGCUGCgUGCG----------UGGCUGCGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 115536 | 0.7 | 0.62282 |
Target: 5'- ----aGACGCGCGCACgGGCgaGCGCg- -3' miRNA: 3'- aguagCUGCGUGCGUGgCUG--CGCGau -5' |
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25042 | 3' | -57.1 | NC_005336.1 | + | 100414 | 0.7 | 0.612601 |
Target: 5'- ---aCGACGgGCgGCGCCGcACGCGCg- -3' miRNA: 3'- aguaGCUGCgUG-CGUGGC-UGCGCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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