miRNA display CGI


Results 121 - 140 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 35466 0.7 0.653491
Target:  5'- -gGUCGGCcuGCACGCGCuCcACGCGCg- -3'
miRNA:   3'- agUAGCUG--CGUGCGUG-GcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 7838 0.7 0.62282
Target:  5'- cCGguagCG-CGgAUGCGCCGGCGCGCg- -3'
miRNA:   3'- aGUa---GCuGCgUGCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 63035 0.7 0.633047
Target:  5'- aCAUCGACuaCGCGCugCGGCGCaccGCg- -3'
miRNA:   3'- aGUAGCUGc-GUGCGugGCUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 101183 0.7 0.633047
Target:  5'- -gGUguGCGCGCGCACCagcguGACGCGCg- -3'
miRNA:   3'- agUAgcUGCGUGCGUGG-----CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 109930 0.7 0.643274
Target:  5'- gCGUCGACGaCGuCGCgACCuGCGCGCg- -3'
miRNA:   3'- aGUAGCUGC-GU-GCG-UGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 8281 0.7 0.653491
Target:  5'- gCAU-GACGCucGCGCGCgGGCGCGUg- -3'
miRNA:   3'- aGUAgCUGCG--UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 15108 0.7 0.653491
Target:  5'- -gGUCGGCGC-C-CGCCGACGcCGCg- -3'
miRNA:   3'- agUAGCUGCGuGcGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 15755 0.69 0.704153
Target:  5'- gCGUCGccaggGCgGCGCGCA-CGGCGCGCg- -3'
miRNA:   3'- aGUAGC-----UG-CGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 50488 0.69 0.673867
Target:  5'- gUCuauggCGACGCGCgGCACgcaGACGgGCUAg -3'
miRNA:   3'- -AGua---GCUGCGUG-CGUGg--CUGCgCGAU- -5'
25042 3' -57.1 NC_005336.1 + 99609 0.69 0.711151
Target:  5'- cUCAagGGcCGCGCGCugcgcgccgaccacAUCGACGCGCUu -3'
miRNA:   3'- -AGUagCU-GCGUGCG--------------UGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 11795 0.69 0.663692
Target:  5'- cUCGcgCGugGC-CGCGCuCGGCGUGCg- -3'
miRNA:   3'- -AGUa-GCugCGuGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 38678 0.69 0.663692
Target:  5'- --cUCGGgucCGCGCGCACgGugGUGCUc -3'
miRNA:   3'- aguAGCU---GCGUGCGUGgCugCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 85614 0.69 0.704153
Target:  5'- cCGUCG-CGCgGCGcCGCCGAcCGCGCc- -3'
miRNA:   3'- aGUAGCuGCG-UGC-GUGGCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 86113 0.69 0.704153
Target:  5'- ---cCGGCGCaggaaGCGCACC-ACGCGCa- -3'
miRNA:   3'- aguaGCUGCG-----UGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 35350 0.69 0.71414
Target:  5'- cUCGUCGGC-CACGUACgCGAcCGUGCc- -3'
miRNA:   3'- -AGUAGCUGcGUGCGUG-GCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 111018 0.69 0.71414
Target:  5'- aCAUgGACGCGCaGCGCgugguCGAgGCGCUc -3'
miRNA:   3'- aGUAgCUGCGUG-CGUG-----GCUgCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 5776 0.69 0.704153
Target:  5'- gCAggCGGC-CGCGCACCGcacccACGCGCa- -3'
miRNA:   3'- aGUa-GCUGcGUGCGUGGC-----UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 106008 0.69 0.71414
Target:  5'- cUCGUCGACG---GCGCCGAgCGCGUg- -3'
miRNA:   3'- -AGUAGCUGCgugCGUGGCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40653 0.69 0.673867
Target:  5'- ---gCGGCGcCGCGCACCcaGGCGUGCg- -3'
miRNA:   3'- aguaGCUGC-GUGCGUGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 93394 0.69 0.663692
Target:  5'- gUCGUCcaaacaGGCGCccCGCGCgGGCGCGCg- -3'
miRNA:   3'- -AGUAG------CUGCGu-GCGUGgCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.