miRNA display CGI


Results 81 - 100 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 124698 0.71 0.541864
Target:  5'- gCGUCGGCGgGCGCcgACCGcUGCGCg- -3'
miRNA:   3'- aGUAGCUGCgUGCG--UGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 71931 0.71 0.551836
Target:  5'- gCGUCGGCGCG-GCGCUGGCGUGg-- -3'
miRNA:   3'- aGUAGCUGCGUgCGUGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 68301 0.71 0.561863
Target:  5'- ----gGGCGUGCGUGCUGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUGCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 65482 0.71 0.561863
Target:  5'- aCAaaGGCGguCGCGCUGAUGUGCUGc -3'
miRNA:   3'- aGUagCUGCguGCGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 59364 0.71 0.561863
Target:  5'- gCGUCGGCcuGCGCGcCGCCGGCaGCGUg- -3'
miRNA:   3'- aGUAGCUG--CGUGC-GUGGCUG-CGCGau -5'
25042 3' -57.1 NC_005336.1 + 126988 0.71 0.561863
Target:  5'- aCGUgGAgCGCAUGCGCCGGC-UGCUGg -3'
miRNA:   3'- aGUAgCU-GCGUGCGUGGCUGcGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 120040 0.71 0.561863
Target:  5'- cCGUCGccGCGgGCgGCACCGAgCGCGCg- -3'
miRNA:   3'- aGUAGC--UGCgUG-CGUGGCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 67634 0.71 0.571939
Target:  5'- gUCGUcCGGCGgcggcuCGCGCGCCG-CGCGCa- -3'
miRNA:   3'- -AGUA-GCUGC------GUGCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 38222 0.71 0.571939
Target:  5'- uUCAUgCG-CGcCGCGC-CCGGCGCGCg- -3'
miRNA:   3'- -AGUA-GCuGC-GUGCGuGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 60463 0.71 0.571939
Target:  5'- uUCAUCGAgaUGC-CGCGgCGGCGCGUg- -3'
miRNA:   3'- -AGUAGCU--GCGuGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 9175 0.71 0.582057
Target:  5'- -aGUCGcgcaGCGCGCGCAgCG-CGCGCUc -3'
miRNA:   3'- agUAGC----UGCGUGCGUgGCuGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 34273 0.71 0.582057
Target:  5'- ---cCGGCGCACGCGCgCGgcgacugggGCGCGCg- -3'
miRNA:   3'- aguaGCUGCGUGCGUG-GC---------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 21478 0.71 0.582057
Target:  5'- ---cCGACGCGCGCuucauggaggugGCCGcGCGCGCg- -3'
miRNA:   3'- aguaGCUGCGUGCG------------UGGC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 51305 0.71 0.592212
Target:  5'- -gGUCuucuCGCGCGCGCCcGCGCGCg- -3'
miRNA:   3'- agUAGcu--GCGUGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 6520 0.71 0.592212
Target:  5'- -gGUCGAa-CACGUACCGcGCGCGCUu -3'
miRNA:   3'- agUAGCUgcGUGCGUGGC-UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 112309 0.71 0.592212
Target:  5'- ---aCGugGUGCGCGCgGACGCGgUGg -3'
miRNA:   3'- aguaGCugCGUGCGUGgCUGCGCgAU- -5'
25042 3' -57.1 NC_005336.1 + 61644 0.71 0.592212
Target:  5'- cCA-CGcccGCGCGCGCGCCGgACGCGUc- -3'
miRNA:   3'- aGUaGC---UGCGUGCGUGGC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40461 0.7 0.602395
Target:  5'- cCGgaggCGGCGCACGCAgCGAgcacuucguCGCGCg- -3'
miRNA:   3'- aGUa---GCUGCGUGCGUgGCU---------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 129189 0.7 0.602395
Target:  5'- ----gGGCGCGCGCGCCGcCGCGg-- -3'
miRNA:   3'- aguagCUGCGUGCGUGGCuGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 90253 0.7 0.602395
Target:  5'- cUCAgucUCGGgGCcgccGCuGCACCGGCGCGCg- -3'
miRNA:   3'- -AGU---AGCUgCG----UG-CGUGGCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.