miRNA display CGI


Results 101 - 120 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 100414 0.7 0.612601
Target:  5'- ---aCGACGgGCgGCGCCGcACGCGCg- -3'
miRNA:   3'- aguaGCUGCgUG-CGUGGC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 121156 0.7 0.612601
Target:  5'- gCcgCGACGCA-GUGCgGGCGCGCUc -3'
miRNA:   3'- aGuaGCUGCGUgCGUGgCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 3734 0.7 0.62282
Target:  5'- gCG-CGGCGgGCGCggugagggaaGCCGGCGCGCg- -3'
miRNA:   3'- aGUaGCUGCgUGCG----------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 7838 0.7 0.62282
Target:  5'- cCGguagCG-CGgAUGCGCCGGCGCGCg- -3'
miRNA:   3'- aGUa---GCuGCgUGCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 127920 0.7 0.62282
Target:  5'- aCAaCuGCGCGCGCGCCG-UGCGCa- -3'
miRNA:   3'- aGUaGcUGCGUGCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 17280 0.7 0.62282
Target:  5'- gCGUCcACGCGcCGCACCGcUGCGUUGa -3'
miRNA:   3'- aGUAGcUGCGU-GCGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 16328 0.7 0.62282
Target:  5'- gCAUCGAgCGCACgGCGCCcuccgcggcgggGugGCGCg- -3'
miRNA:   3'- aGUAGCU-GCGUG-CGUGG------------CugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 115536 0.7 0.62282
Target:  5'- ----aGACGCGCGCACgGGCgaGCGCg- -3'
miRNA:   3'- aguagCUGCGUGCGUGgCUG--CGCGau -5'
25042 3' -57.1 NC_005336.1 + 3734 0.7 0.62282
Target:  5'- gCG-CGGCGgGCGCggugagggaaGCCGGCGCGCg- -3'
miRNA:   3'- aGUaGCUGCgUGCG----------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 31743 0.7 0.62282
Target:  5'- gCGUCGAUGCugaGC-CCGAgGCGCa- -3'
miRNA:   3'- aGUAGCUGCGug-CGuGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 57967 0.7 0.633047
Target:  5'- aCG-CGGCGCugcacaacCGCACCGACGCGg-- -3'
miRNA:   3'- aGUaGCUGCGu-------GCGUGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 124616 0.7 0.633047
Target:  5'- aCAaCGACuGCGCGCgccaggGCCGugGCGCc- -3'
miRNA:   3'- aGUaGCUG-CGUGCG------UGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 71346 0.7 0.633047
Target:  5'- gUCcgCGGCgGCGCGC-CCGGCgGCGCc- -3'
miRNA:   3'- -AGuaGCUG-CGUGCGuGGCUG-CGCGau -5'
25042 3' -57.1 NC_005336.1 + 49348 0.7 0.633047
Target:  5'- cCAUCGcccGCGCGCGCGugaccagcuCCGGCGcCGCg- -3'
miRNA:   3'- aGUAGC---UGCGUGCGU---------GGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 65277 0.7 0.633047
Target:  5'- gUCGUCGcgaggGCGCGCgGCuCCGAgGCGCg- -3'
miRNA:   3'- -AGUAGC-----UGCGUG-CGuGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 101183 0.7 0.633047
Target:  5'- -gGUguGCGCGCGCACCagcguGACGCGCg- -3'
miRNA:   3'- agUAgcUGCGUGCGUGG-----CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 127422 0.7 0.633047
Target:  5'- cCggUGGCGCuCGCGCUGAuCGCGCUc -3'
miRNA:   3'- aGuaGCUGCGuGCGUGGCU-GCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 63035 0.7 0.633047
Target:  5'- aCAUCGACuaCGCGCugCGGCGCaccGCg- -3'
miRNA:   3'- aGUAGCUGc-GUGCGugGCUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 109177 0.7 0.643274
Target:  5'- -gGUCGAa-CACGCGCCGguccACGCGCg- -3'
miRNA:   3'- agUAGCUgcGUGCGUGGC----UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 109930 0.7 0.643274
Target:  5'- gCGUCGACGaCGuCGCgACCuGCGCGCg- -3'
miRNA:   3'- aGUAGCUGC-GU-GCG-UGGcUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.