miRNA display CGI


Results 121 - 140 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 37206 0.7 0.643274
Target:  5'- aCAUCacguaGCGC-CGC-CCGGCGCGCUc -3'
miRNA:   3'- aGUAGc----UGCGuGCGuGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 8281 0.7 0.653491
Target:  5'- gCAU-GACGCucGCGCGCgGGCGCGUg- -3'
miRNA:   3'- aGUAgCUGCG--UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 15108 0.7 0.653491
Target:  5'- -gGUCGGCGC-C-CGCCGACGcCGCg- -3'
miRNA:   3'- agUAGCUGCGuGcGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 10618 0.7 0.653491
Target:  5'- gCggCGGCGCGCGCGCCcucCGCGUc- -3'
miRNA:   3'- aGuaGCUGCGUGCGUGGcu-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 35466 0.7 0.653491
Target:  5'- -gGUCGGCcuGCACGCGCuCcACGCGCg- -3'
miRNA:   3'- agUAGCUG--CGUGCGUG-GcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 39696 0.7 0.653491
Target:  5'- gCG-CGGCGgGCGCcucGCCGcCGCGCUGg -3'
miRNA:   3'- aGUaGCUGCgUGCG---UGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 26402 0.7 0.653491
Target:  5'- cUCGUCGACGCGuuugugcaGCACgCGgcacACGCGCUc -3'
miRNA:   3'- -AGUAGCUGCGUg-------CGUG-GC----UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 11795 0.69 0.663692
Target:  5'- cUCGcgCGugGC-CGCGCuCGGCGUGCg- -3'
miRNA:   3'- -AGUa-GCugCGuGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 38678 0.69 0.663692
Target:  5'- --cUCGGgucCGCGCGCACgGugGUGCUc -3'
miRNA:   3'- aguAGCU---GCGUGCGUGgCugCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 93394 0.69 0.663692
Target:  5'- gUCGUCcaaacaGGCGCccCGCGCgGGCGCGCg- -3'
miRNA:   3'- -AGUAG------CUGCGu-GCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 130347 0.69 0.663692
Target:  5'- aCGUggUGGCGCGCGCGCCGA-GCGa-- -3'
miRNA:   3'- aGUA--GCUGCGUGCGUGGCUgCGCgau -5'
25042 3' -57.1 NC_005336.1 + 61441 0.69 0.663692
Target:  5'- ---gCGACGCuCGUacuccuGCCGGCGCGCg- -3'
miRNA:   3'- aguaGCUGCGuGCG------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 123958 0.69 0.663692
Target:  5'- cUCAUCGcCGCGgGCGCgGACGUGa-- -3'
miRNA:   3'- -AGUAGCuGCGUgCGUGgCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 103405 0.69 0.672851
Target:  5'- aUCGUgGACGCGuucgugcucgaccUGCGCCGGCGCaaGCg- -3'
miRNA:   3'- -AGUAgCUGCGU-------------GCGUGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 40653 0.69 0.673867
Target:  5'- ---gCGGCGcCGCGCACCcaGGCGUGCg- -3'
miRNA:   3'- aguaGCUGC-GUGCGUGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 134475 0.69 0.673867
Target:  5'- gCGUgGugGCAauuucgcugcUGCGCCG-CGCGCUGc -3'
miRNA:   3'- aGUAgCugCGU----------GCGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 64847 0.69 0.673867
Target:  5'- --cUCGGgGCaagGCGCGCgCGGCGCGCg- -3'
miRNA:   3'- aguAGCUgCG---UGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 52116 0.69 0.673867
Target:  5'- uUCGaCGGCGCGCagGCugCGgagcgcGCGCGCUAc -3'
miRNA:   3'- -AGUaGCUGCGUG--CGugGC------UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 16241 0.69 0.673867
Target:  5'- uUCGUCGAgCGCcucggggucCGCGCCcGCGCGCa- -3'
miRNA:   3'- -AGUAGCU-GCGu--------GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 13091 0.69 0.673867
Target:  5'- gCAggCGGCGcCGCGUGCCGugcACGCGCg- -3'
miRNA:   3'- aGUa-GCUGC-GUGCGUGGC---UGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.