miRNA display CGI


Results 61 - 80 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 44262 0.66 0.842471
Target:  5'- ---gCGACGCGCaccgcgccGCGCCGGagUGCGCUu -3'
miRNA:   3'- aguaGCUGCGUG--------CGUGGCU--GCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 97301 0.66 0.842471
Target:  5'- ----aGugGCGCGCgGCCGugGCGgaGc -3'
miRNA:   3'- aguagCugCGUGCG-UGGCugCGCgaU- -5'
25042 3' -57.1 NC_005336.1 + 97952 0.66 0.842471
Target:  5'- -gGUC-ACGCGCGCACUG-CGCGaCa- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGCuGCGC-Gau -5'
25042 3' -57.1 NC_005336.1 + 90010 0.66 0.842471
Target:  5'- uUC-UCGGaGCGCGCGCuCGcgaugcucaGCGCGCUGu -3'
miRNA:   3'- -AGuAGCUgCGUGCGUG-GC---------UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 6611 0.66 0.842471
Target:  5'- cCA-CGGCGCGugcgucUGCGCCcGCGCGCa- -3'
miRNA:   3'- aGUaGCUGCGU------GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 80610 0.66 0.842471
Target:  5'- -gAUCuGCGCgGCGCGCUuGCGCGCg- -3'
miRNA:   3'- agUAGcUGCG-UGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 10139 0.66 0.842471
Target:  5'- -aGUCGGCGCuCGCGgCGGUGUGCa- -3'
miRNA:   3'- agUAGCUGCGuGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 110846 0.66 0.842471
Target:  5'- cUCGUCGGCGaaguCGUAgCaGAUGCGCUc -3'
miRNA:   3'- -AGUAGCUGCgu--GCGUgG-CUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 75350 0.66 0.841661
Target:  5'- gUCAucUCGugGCuguucagGCGCACCG-CGCGg-- -3'
miRNA:   3'- -AGU--AGCugCG-------UGCGUGGCuGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 71569 0.66 0.834283
Target:  5'- cCGUCGGCagcgGCACGCGcgaggccuccuCCG-CGCGCa- -3'
miRNA:   3'- aGUAGCUG----CGUGCGU-----------GGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 24238 0.66 0.834283
Target:  5'- cUCAUCGccagucggauGCGCGUGCACU-ACGCGCg- -3'
miRNA:   3'- -AGUAGC----------UGCGUGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 7183 0.66 0.834283
Target:  5'- cCA-CGAgCGCGCGgACCGugGCGa-- -3'
miRNA:   3'- aGUaGCU-GCGUGCgUGGCugCGCgau -5'
25042 3' -57.1 NC_005336.1 + 72245 0.66 0.834283
Target:  5'- aCGUgGACGUcgGCGaCAUCGugGUGCa- -3'
miRNA:   3'- aGUAgCUGCG--UGC-GUGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 124647 0.66 0.834283
Target:  5'- gUCAUggagGACGUggGCGgCGGCGUGCUGc -3'
miRNA:   3'- -AGUAg---CUGCGugCGUgGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 30611 0.66 0.834283
Target:  5'- gCGggCGGCccGCGCGUggACCGGCGCGUg- -3'
miRNA:   3'- aGUa-GCUG--CGUGCG--UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 61864 0.66 0.834283
Target:  5'- --cUCG-CGCACGacCGCgCGGCGCGCg- -3'
miRNA:   3'- aguAGCuGCGUGC--GUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 29200 0.66 0.834283
Target:  5'- gUCGUCGcgcucgcggaguGCGUGCuuacgcaguGCGCCGcCGCGCUGc -3'
miRNA:   3'- -AGUAGC------------UGCGUG---------CGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 82419 0.66 0.834283
Target:  5'- -gGUCaGGUGCGCGCGCuUGAUGCGCa- -3'
miRNA:   3'- agUAG-CUGCGUGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 71377 0.66 0.834283
Target:  5'- cUCGcUGGCGCccACGC-CCGACGCGg-- -3'
miRNA:   3'- -AGUaGCUGCG--UGCGuGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 76966 0.66 0.833453
Target:  5'- gUCuUCGugGCGCgguggccgaaccaGCGCCGGCGCa--- -3'
miRNA:   3'- -AGuAGCugCGUG-------------CGUGGCUGCGcgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.