miRNA display CGI


Results 81 - 100 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 121077 0.66 0.82591
Target:  5'- gCAUgGACGaGCGCgACCGGCGCcgGCa- -3'
miRNA:   3'- aGUAgCUGCgUGCG-UGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 18472 0.66 0.82591
Target:  5'- cCGcCGGCGCGaGCAccuCCGugGCGCa- -3'
miRNA:   3'- aGUaGCUGCGUgCGU---GGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 99504 0.66 0.82591
Target:  5'- -gGUCGGCGCGcCGCuggauagcggACCG-CGCGCc- -3'
miRNA:   3'- agUAGCUGCGU-GCG----------UGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 97059 0.66 0.82591
Target:  5'- cUCcgCG-CGCAUGCG-CGGCGUGCg- -3'
miRNA:   3'- -AGuaGCuGCGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 68207 0.66 0.82591
Target:  5'- gCGUgGACGCuGCGCGCgGAggaggccuCGCGCg- -3'
miRNA:   3'- aGUAgCUGCG-UGCGUGgCU--------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 48076 0.66 0.82591
Target:  5'- cCGUCGGCGuCACaCACCugcggaugGACGCGCn- -3'
miRNA:   3'- aGUAGCUGC-GUGcGUGG--------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 17739 0.66 0.82591
Target:  5'- -aAUCGuGCGCGCGUccggcGCCcaGGCGCGCa- -3'
miRNA:   3'- agUAGC-UGCGUGCG-----UGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 136461 0.66 0.82591
Target:  5'- gCAcgCGAgcuucuccucCGCGCGCAagGGCGCGCUGc -3'
miRNA:   3'- aGUa-GCU----------GCGUGCGUggCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 6825 0.66 0.82591
Target:  5'- cUCGUUcACGCGCGCGCCcGCGUccaGCa- -3'
miRNA:   3'- -AGUAGcUGCGUGCGUGGcUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 122921 0.66 0.82591
Target:  5'- aCGUgCGGCaggcCACGCugCG-CGCGCUGc -3'
miRNA:   3'- aGUA-GCUGc---GUGCGugGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 38455 0.66 0.82591
Target:  5'- -gAUCGGcCGC-CGCcCCGugGUGCUc -3'
miRNA:   3'- agUAGCU-GCGuGCGuGGCugCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 97394 0.66 0.82591
Target:  5'- gUCGUUGGCGCG-GCAC--ACGCGCa- -3'
miRNA:   3'- -AGUAGCUGCGUgCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 136461 0.66 0.82591
Target:  5'- gCAcgCGAgcuucuccucCGCGCGCAagGGCGCGCUGc -3'
miRNA:   3'- aGUa-GCU----------GCGUGCGUggCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 16575 0.66 0.82591
Target:  5'- gCGUUGAUGUcUGCGCCGGCGUccaGCa- -3'
miRNA:   3'- aGUAGCUGCGuGCGUGGCUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 11856 0.67 0.820802
Target:  5'- gCGUcCGGCGCcaagggcagcgcuguGCGCA-CGGCGCGCg- -3'
miRNA:   3'- aGUA-GCUGCG---------------UGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 106275 0.67 0.820802
Target:  5'- gUCGUCGACgaggagcugcuguguGCgAUGCGCCGGCGCu--- -3'
miRNA:   3'- -AGUAGCUG---------------CG-UGCGUGGCUGCGcgau -5'
25042 3' -57.1 NC_005336.1 + 43608 0.67 0.817362
Target:  5'- cCA-CGcuCGCGCGCGCUGGCGaCGCc- -3'
miRNA:   3'- aGUaGCu-GCGUGCGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 3310 0.67 0.817362
Target:  5'- gUCG-CGACGUgcagcagcaGCGCGCCcuuGCGCGCg- -3'
miRNA:   3'- -AGUaGCUGCG---------UGCGUGGc--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 109489 0.67 0.817362
Target:  5'- -uGUCcaGGCGCGCGCggcaGCCGAagaaGCGCg- -3'
miRNA:   3'- agUAG--CUGCGUGCG----UGGCUg---CGCGau -5'
25042 3' -57.1 NC_005336.1 + 95523 0.67 0.817362
Target:  5'- ---gCGACGCaaGCGCAcuCCGGCGCGg-- -3'
miRNA:   3'- aguaGCUGCG--UGCGU--GGCUGCGCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.