miRNA display CGI


Results 101 - 120 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 43608 0.67 0.817362
Target:  5'- cCA-CGcuCGCGCGCGCUGGCGaCGCc- -3'
miRNA:   3'- aGUaGCu-GCGUGCGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 109234 0.67 0.817362
Target:  5'- uUCGUCGACGCcauCGUgGCCGGCG-GCc- -3'
miRNA:   3'- -AGUAGCUGCGu--GCG-UGGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 124573 0.67 0.817362
Target:  5'- aCGUCGACGC-CuCcCCGACGCGg-- -3'
miRNA:   3'- aGUAGCUGCGuGcGuGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 84535 0.67 0.817362
Target:  5'- gUCcUCGAacaGCGCGCGC--ACGCGCUu -3'
miRNA:   3'- -AGuAGCUg--CGUGCGUGgcUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 91337 0.67 0.817362
Target:  5'- uUCAUgaCGGCGUccagcuGCGCGCCGGCGUugGCc- -3'
miRNA:   3'- -AGUA--GCUGCG------UGCGUGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 43960 0.67 0.817362
Target:  5'- --cUCGGCGCcgcccacggACGcCGCCauGGCGCGCUGc -3'
miRNA:   3'- aguAGCUGCG---------UGC-GUGG--CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 69011 0.67 0.817362
Target:  5'- gUCuUCGugGCGcCGCAgaG-CGCGCUGg -3'
miRNA:   3'- -AGuAGCugCGU-GCGUggCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 3310 0.67 0.817362
Target:  5'- gUCG-CGACGUgcagcagcaGCGCGCCcuuGCGCGCg- -3'
miRNA:   3'- -AGUaGCUGCG---------UGCGUGGc--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 11098 0.67 0.812152
Target:  5'- gUCGUCGAggcUGCGCGCGgCCGAgaccgacagcgggucCGCGUUc -3'
miRNA:   3'- -AGUAGCU---GCGUGCGU-GGCU---------------GCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 17705 0.67 0.808646
Target:  5'- gCGUCGuguuuCGCAUGCAC--ACGCGCg- -3'
miRNA:   3'- aGUAGCu----GCGUGCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 70952 0.67 0.808646
Target:  5'- --uUCGugGCcaacAUGCACCugcGGCGCGCg- -3'
miRNA:   3'- aguAGCugCG----UGCGUGG---CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 68399 0.67 0.808646
Target:  5'- uUCG-CGGCGCuggGCGCGCC--CGCGCUc -3'
miRNA:   3'- -AGUaGCUGCG---UGCGUGGcuGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 22226 0.67 0.808646
Target:  5'- uUCAgcgcaGACGCGCgGCugCGAgaGCGCUu -3'
miRNA:   3'- -AGUag---CUGCGUG-CGugGCUg-CGCGAu -5'
25042 3' -57.1 NC_005336.1 + 98666 0.67 0.808646
Target:  5'- -gAUCcGCGCACacgGCAgCGGCGCGCc- -3'
miRNA:   3'- agUAGcUGCGUG---CGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 106930 0.67 0.808646
Target:  5'- aCcgCGcCGC-CGCGCUGGUGCGCUGc -3'
miRNA:   3'- aGuaGCuGCGuGCGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 62858 0.67 0.808646
Target:  5'- --cUCGcCGCGCGCGCCuGGcCGcCGCUGc -3'
miRNA:   3'- aguAGCuGCGUGCGUGG-CU-GC-GCGAU- -5'
25042 3' -57.1 NC_005336.1 + 39301 0.67 0.808646
Target:  5'- cUCcgCGAgCGCgaggaagguGCGCACCGAgcggcgcuUGCGCUGc -3'
miRNA:   3'- -AGuaGCU-GCG---------UGCGUGGCU--------GCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 71963 0.67 0.808646
Target:  5'- cUCGUgGAgCGCgaccaccgcgGCGCGCCcGCGCGCg- -3'
miRNA:   3'- -AGUAgCU-GCG----------UGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 71389 0.67 0.808646
Target:  5'- gCGggGGCGCGaGCGCgGGCGCGCc- -3'
miRNA:   3'- aGUagCUGCGUgCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 47687 0.67 0.808646
Target:  5'- gCGUCGACGCggacuucugcGCGCACUGgaucaACGCGg-- -3'
miRNA:   3'- aGUAGCUGCG----------UGCGUGGC-----UGCGCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.