miRNA display CGI


Results 41 - 60 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 15108 0.7 0.653491
Target:  5'- -gGUCGGCGC-C-CGCCGACGcCGCg- -3'
miRNA:   3'- agUAGCUGCGuGcGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 15546 0.69 0.704153
Target:  5'- gCAUCG-CGC-CGCGCgCGGCGCGg-- -3'
miRNA:   3'- aGUAGCuGCGuGCGUG-GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 15755 0.69 0.704153
Target:  5'- gCGUCGccaggGCgGCGCGCA-CGGCGCGCg- -3'
miRNA:   3'- aGUAGC-----UG-CGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 15934 0.68 0.753293
Target:  5'- gCGUUGAUGUccGCGcCGCCGGCGaugaGCUGg -3'
miRNA:   3'- aGUAGCUGCG--UGC-GUGGCUGCg---CGAU- -5'
25042 3' -57.1 NC_005336.1 + 16124 0.66 0.858269
Target:  5'- gCGUCcGCGCGCGuCGCgCGACGUGg-- -3'
miRNA:   3'- aGUAGcUGCGUGC-GUG-GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 16241 0.69 0.673867
Target:  5'- uUCGUCGAgCGCcucggggucCGCGCCcGCGCGCa- -3'
miRNA:   3'- -AGUAGCU-GCGu--------GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 16328 0.7 0.62282
Target:  5'- gCAUCGAgCGCACgGCGCCcuccgcggcgggGugGCGCg- -3'
miRNA:   3'- aGUAGCU-GCGUG-CGUGG------------CugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 16395 0.66 0.858269
Target:  5'- aCGUCcAgGCGCGCGCCGcCGUccacGCUGu -3'
miRNA:   3'- aGUAGcUgCGUGCGUGGCuGCG----CGAU- -5'
25042 3' -57.1 NC_005336.1 + 16575 0.66 0.82591
Target:  5'- gCGUUGAUGUcUGCGCCGGCGUccaGCa- -3'
miRNA:   3'- aGUAGCUGCGuGCGUGGCUGCG---CGau -5'
25042 3' -57.1 NC_005336.1 + 16586 0.68 0.742671
Target:  5'- cCA-CGGCGCGCGCGaacCCGcaguccaGCGCGCg- -3'
miRNA:   3'- aGUaGCUGCGUGCGU---GGC-------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 17280 0.7 0.62282
Target:  5'- gCGUCcACGCGcCGCACCGcUGCGUUGa -3'
miRNA:   3'- aGUAGcUGCGU-GCGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 17705 0.67 0.808646
Target:  5'- gCGUCGuguuuCGCAUGCAC--ACGCGCg- -3'
miRNA:   3'- aGUAGCu----GCGUGCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 17739 0.66 0.82591
Target:  5'- -aAUCGuGCGCGCGUccggcGCCcaGGCGCGCa- -3'
miRNA:   3'- agUAGC-UGCGUGCG-----UGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 18237 0.68 0.724056
Target:  5'- cUCAUgGACGCcggGCGCAUgCGGCGCGa-- -3'
miRNA:   3'- -AGUAgCUGCG---UGCGUG-GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 18472 0.66 0.82591
Target:  5'- cCGcCGGCGCGaGCAccuCCGugGCGCa- -3'
miRNA:   3'- aGUaGCUGCGUgCGU---GGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 18720 0.67 0.781572
Target:  5'- aCGUCGgggaaguucugGCGCACGCAggccUCGGCGaCGCg- -3'
miRNA:   3'- aGUAGC-----------UGCGUGCGU----GGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 19379 0.66 0.850469
Target:  5'- gCGUUGAuguugUGCACGCugCG-CGCGUUc -3'
miRNA:   3'- aGUAGCU-----GCGUGCGugGCuGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 19928 0.66 0.850469
Target:  5'- gCGcUGGCGCAgGCGgUGugGCGCg- -3'
miRNA:   3'- aGUaGCUGCGUgCGUgGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 20978 0.67 0.790742
Target:  5'- cUCG-CGAUGCGCGCAgccuCCGcCGCGUc- -3'
miRNA:   3'- -AGUaGCUGCGUGCGU----GGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 21116 0.75 0.368881
Target:  5'- cCGUUG-CGCuuGCGCGCCGGCGUGCa- -3'
miRNA:   3'- aGUAGCuGCG--UGCGUGGCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.