miRNA display CGI


Results 61 - 80 of 397 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 21351 0.66 0.865115
Target:  5'- gUCuUCGACGC-CGUGCucaaggcagccuuCGACGCGCc- -3'
miRNA:   3'- -AGuAGCUGCGuGCGUG-------------GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 21478 0.71 0.582057
Target:  5'- ---cCGACGCGCGCuucauggaggugGCCGcGCGCGCg- -3'
miRNA:   3'- aguaGCUGCGUGCG------------UGGC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 21843 0.66 0.850469
Target:  5'- ---cUGaACGCGCGCgugGCCGACGaCGCg- -3'
miRNA:   3'- aguaGC-UGCGUGCG---UGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 22115 0.82 0.136889
Target:  5'- uUCGUCGACGgACGCACCuucaccucgGACGCGCg- -3'
miRNA:   3'- -AGUAGCUGCgUGCGUGG---------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 22226 0.67 0.808646
Target:  5'- uUCAgcgcaGACGCGCgGCugCGAgaGCGCUu -3'
miRNA:   3'- -AGUag---CUGCGUG-CGugGCUg-CGCGAu -5'
25042 3' -57.1 NC_005336.1 + 22740 0.68 0.743642
Target:  5'- aCAU-GACGCGCGUg--GACGCGCUGc -3'
miRNA:   3'- aGUAgCUGCGUGCGuggCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 23903 0.74 0.402142
Target:  5'- gUCGUCGGgGCGCGCGCgGccGCGgGCUGc -3'
miRNA:   3'- -AGUAGCUgCGUGCGUGgC--UGCgCGAU- -5'
25042 3' -57.1 NC_005336.1 + 24200 0.67 0.799769
Target:  5'- aCcgCGACGCGCuguucGCGCCGuACGC-CUGc -3'
miRNA:   3'- aGuaGCUGCGUG-----CGUGGC-UGCGcGAU- -5'
25042 3' -57.1 NC_005336.1 + 24238 0.66 0.834283
Target:  5'- cUCAUCGccagucggauGCGCGUGCACU-ACGCGCg- -3'
miRNA:   3'- -AGUAGC----------UGCGUGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 24393 0.66 0.858269
Target:  5'- --cUCGACGUgguccaugcuggGCGCGCCGAC-CGUg- -3'
miRNA:   3'- aguAGCUGCG------------UGCGUGGCUGcGCGau -5'
25042 3' -57.1 NC_005336.1 + 26402 0.7 0.653491
Target:  5'- cUCGUCGACGCGuuugugcaGCACgCGgcacACGCGCUc -3'
miRNA:   3'- -AGUAGCUGCGUg-------CGUG-GC----UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 27181 0.66 0.858269
Target:  5'- cUCcgCGAaGCACGCGCCGGgguUGuCGCa- -3'
miRNA:   3'- -AGuaGCUgCGUGCGUGGCU---GC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 28781 0.66 0.858269
Target:  5'- --cUCGAC-CACGCGCUG-CGCGUc- -3'
miRNA:   3'- aguAGCUGcGUGCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 29200 0.66 0.834283
Target:  5'- gUCGUCGcgcucgcggaguGCGUGCuuacgcaguGCGCCGcCGCGCUGc -3'
miRNA:   3'- -AGUAGC------------UGCGUG---------CGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 29766 0.68 0.733893
Target:  5'- cCAUCG-CGCccucGCGCACCGcCuGCGCg- -3'
miRNA:   3'- aGUAGCuGCG----UGCGUGGCuG-CGCGau -5'
25042 3' -57.1 NC_005336.1 + 29817 0.66 0.865865
Target:  5'- uUCAUCGu--C-CGCGgCGACGCGCUc -3'
miRNA:   3'- -AGUAGCugcGuGCGUgGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 30207 0.66 0.858269
Target:  5'- cCGUgGACGUGC-CGCCGGaccCGCGCg- -3'
miRNA:   3'- aGUAgCUGCGUGcGUGGCU---GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 30611 0.66 0.834283
Target:  5'- gCGggCGGCccGCGCGUggACCGGCGCGUg- -3'
miRNA:   3'- aGUa-GCUG--CGUGCG--UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 30662 0.73 0.474045
Target:  5'- --uUCGACGUGCGCAagaaGugGCGCUGc -3'
miRNA:   3'- aguAGCUGCGUGCGUgg--CugCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 31743 0.7 0.62282
Target:  5'- gCGUCGAUGCugaGC-CCGAgGCGCa- -3'
miRNA:   3'- aGUAGCUGCGug-CGuGGCUgCGCGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.