miRNA display CGI


Results 81 - 100 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 31897 0.66 0.850469
Target:  5'- aCAUCGcCGCGCGCAuguCCaGCGUGUc- -3'
miRNA:   3'- aGUAGCuGCGUGCGU---GGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 34273 0.71 0.582057
Target:  5'- ---cCGGCGCACGCGCgCGgcgacugggGCGCGCg- -3'
miRNA:   3'- aguaGCUGCGUGCGUG-GC---------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 35049 0.68 0.742671
Target:  5'- -gGUCGAagaGCACGCGCUcgcagaaGACGCGgUGc -3'
miRNA:   3'- agUAGCUg--CGUGCGUGG-------CUGCGCgAU- -5'
25042 3' -57.1 NC_005336.1 + 35350 0.69 0.71414
Target:  5'- cUCGUCGGC-CACGUACgCGAcCGUGCc- -3'
miRNA:   3'- -AGUAGCUGcGUGCGUG-GCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 35417 0.66 0.850469
Target:  5'- gCG-CGGCGCucGCGCACgGucaGCGCGCg- -3'
miRNA:   3'- aGUaGCUGCG--UGCGUGgC---UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 35466 0.7 0.653491
Target:  5'- -gGUCGGCcuGCACGCGCuCcACGCGCg- -3'
miRNA:   3'- agUAGCUG--CGUGCGUG-GcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 36367 0.67 0.799769
Target:  5'- cCcgCGGCcugcaGCGCGCGCgCGAgCGCGCg- -3'
miRNA:   3'- aGuaGCUG-----CGUGCGUG-GCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 37206 0.7 0.643274
Target:  5'- aCAUCacguaGCGC-CGC-CCGGCGCGCUc -3'
miRNA:   3'- aGUAGc----UGCGuGCGuGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 38222 0.71 0.571939
Target:  5'- uUCAUgCG-CGcCGCGC-CCGGCGCGCg- -3'
miRNA:   3'- -AGUA-GCuGC-GUGCGuGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 38455 0.66 0.82591
Target:  5'- -gAUCGGcCGC-CGCcCCGugGUGCUc -3'
miRNA:   3'- agUAGCU-GCGuGCGuGGCugCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 38678 0.69 0.663692
Target:  5'- --cUCGGgucCGCGCGCACgGugGUGCUc -3'
miRNA:   3'- aguAGCU---GCGUGCGUGgCugCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 39301 0.67 0.808646
Target:  5'- cUCcgCGAgCGCgaggaagguGCGCACCGAgcggcgcuUGCGCUGc -3'
miRNA:   3'- -AGuaGCU-GCG---------UGCGUGGCU--------GCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 39422 0.66 0.850469
Target:  5'- gCcgCGugGCGCccgGCACCuACGUGCg- -3'
miRNA:   3'- aGuaGCugCGUG---CGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 39696 0.7 0.653491
Target:  5'- gCG-CGGCGgGCGCcucGCCGcCGCGCUGg -3'
miRNA:   3'- aGUaGCUGCgUGCG---UGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 39991 0.78 0.249415
Target:  5'- gUCGUCGGCG-ACGC-CgCGACGCGCUAc -3'
miRNA:   3'- -AGUAGCUGCgUGCGuG-GCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 40178 0.69 0.71414
Target:  5'- gCGUCGAUGUggucgGCGCGCa-GCGCGCg- -3'
miRNA:   3'- aGUAGCUGCG-----UGCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40258 0.73 0.435449
Target:  5'- cCAcgCGGCGCACGCGCacgaagcaucgaGGCGCGCg- -3'
miRNA:   3'- aGUa-GCUGCGUGCGUGg-----------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40289 0.68 0.733893
Target:  5'- cCggCGGCGCGcCGCGCgGcCGCGCg- -3'
miRNA:   3'- aGuaGCUGCGU-GCGUGgCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40356 0.68 0.743642
Target:  5'- aCGUCGcccucCGCACGCAgCGcCGCGUg- -3'
miRNA:   3'- aGUAGCu----GCGUGCGUgGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40389 0.67 0.797077
Target:  5'- gCGUCGAaguccuCGCGCGCGaaggacucucccgcCCGcACGCGCa- -3'
miRNA:   3'- aGUAGCU------GCGUGCGU--------------GGC-UGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.