miRNA display CGI


Results 101 - 120 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 40434 0.66 0.865865
Target:  5'- aCA-CGcaGCGUGCGCG-CGACGCGCa- -3'
miRNA:   3'- aGUaGC--UGCGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40461 0.7 0.602395
Target:  5'- cCGgaggCGGCGCACGCAgCGAgcacuucguCGCGCg- -3'
miRNA:   3'- aGUa---GCUGCGUGCGUgGCU---------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40584 0.66 0.850469
Target:  5'- gCGUCuuGCGCAugagcCGCGCgGGCGCGCc- -3'
miRNA:   3'- aGUAGc-UGCGU-----GCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40653 0.69 0.673867
Target:  5'- ---gCGGCGcCGCGCACCcaGGCGUGCg- -3'
miRNA:   3'- aguaGCUGC-GUGCGUGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 41142 0.67 0.799769
Target:  5'- gCAggCGACgGCGCGCGggaaaaugaccuCCGGCGUGCg- -3'
miRNA:   3'- aGUa-GCUG-CGUGCGU------------GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 41170 0.76 0.330033
Target:  5'- cUCcgCGcgcuuCGCGCGCugCGGCGCGCg- -3'
miRNA:   3'- -AGuaGCu----GCGUGCGugGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 41847 0.74 0.402142
Target:  5'- cCGUC-ACGCGCGCG-CGGCGCGCg- -3'
miRNA:   3'- aGUAGcUGCGUGCGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 41950 0.66 0.853613
Target:  5'- gCGUCGgugcgcugucgccacGCGCGCGCGuCCGcgagcuCGCGCa- -3'
miRNA:   3'- aGUAGC---------------UGCGUGCGU-GGCu-----GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 42113 0.74 0.402142
Target:  5'- gCggCGACGCACGUugUGACGgGCg- -3'
miRNA:   3'- aGuaGCUGCGUGCGugGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 42212 0.66 0.849678
Target:  5'- uUCGcgCGGCGguaccCGCGCACCGcggccgccguggaGCGCGCg- -3'
miRNA:   3'- -AGUa-GCUGC-----GUGCGUGGC-------------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 42653 0.68 0.762838
Target:  5'- gUCuUCGAC-CGCgGCuCCGGCGUGCUGc -3'
miRNA:   3'- -AGuAGCUGcGUG-CGuGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 43608 0.67 0.817362
Target:  5'- cCA-CGcuCGCGCGCGCUGGCGaCGCc- -3'
miRNA:   3'- aGUaGCu-GCGUGCGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 43960 0.67 0.817362
Target:  5'- --cUCGGCGCcgcccacggACGcCGCCauGGCGCGCUGc -3'
miRNA:   3'- aguAGCUGCG---------UGC-GUGG--CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 44116 0.66 0.85595
Target:  5'- gCGUUuguGCGCggaGCGCucgcggccgaguggGCCGACGCGCUGc -3'
miRNA:   3'- aGUAGc--UGCG---UGCG--------------UGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 44175 0.66 0.84809
Target:  5'- aCAUgGACGCGCGCuucuGCucggaguucgugcgCGugGCGCg- -3'
miRNA:   3'- aGUAgCUGCGUGCG----UG--------------GCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 44261 0.78 0.249415
Target:  5'- ----aGGCGCGCGCGCgCGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 44262 0.66 0.842471
Target:  5'- ---gCGACGCGCaccgcgccGCGCCGGagUGCGCUu -3'
miRNA:   3'- aguaGCUGCGUG--------CGUGGCU--GCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 44826 0.67 0.781572
Target:  5'- aCG-CGGgGCGCGUggACCG-CGCGCUGc -3'
miRNA:   3'- aGUaGCUgCGUGCG--UGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 44841 0.67 0.772267
Target:  5'- --cUCGcCGCAguCGcCGCCGGCGCGCc- -3'
miRNA:   3'- aguAGCuGCGU--GC-GUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 44905 0.66 0.850469
Target:  5'- ----aGACGCAUaGCGCCuuacGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUG-CGUGG----CUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.