miRNA display CGI


Results 121 - 140 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 45607 0.66 0.850469
Target:  5'- gUCGUcCGGCGaCAacccCGCACCGGCGC-Cg- -3'
miRNA:   3'- -AGUA-GCUGC-GU----GCGUGGCUGCGcGau -5'
25042 3' -57.1 NC_005336.1 + 45827 0.78 0.249415
Target:  5'- -aGUCGGUGCACGCGuCCGGCGCGCc- -3'
miRNA:   3'- agUAGCUGCGUGCGU-GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 45844 0.74 0.41075
Target:  5'- cCggCGACGUggauugcguggGCgGCGCCGGCGCGCUGg -3'
miRNA:   3'- aGuaGCUGCG-----------UG-CGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 46388 0.67 0.799769
Target:  5'- --cUCGAacaCGCGCGCGCCcGCGCGg-- -3'
miRNA:   3'- aguAGCU---GCGUGCGUGGcUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 46408 0.67 0.781572
Target:  5'- --cUCGA-GCGCuucCACCGGCGCGCg- -3'
miRNA:   3'- aguAGCUgCGUGc--GUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 47413 0.74 0.428304
Target:  5'- gUCGgcgaCGACGCGCGCAUgGcCGUGCUGa -3'
miRNA:   3'- -AGUa---GCUGCGUGCGUGgCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 47635 0.69 0.71414
Target:  5'- --uUCGACgaggGCGCGUG-CGACGCGCUGc -3'
miRNA:   3'- aguAGCUG----CGUGCGUgGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 47687 0.67 0.808646
Target:  5'- gCGUCGACGCggacuucugcGCGCACUGgaucaACGCGg-- -3'
miRNA:   3'- aGUAGCUGCG----------UGCGUGGC-----UGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 48076 0.66 0.82591
Target:  5'- cCGUCGGCGuCACaCACCugcggaugGACGCGCn- -3'
miRNA:   3'- aGUAGCUGC-GUGcGUGG--------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 48109 0.73 0.446294
Target:  5'- -gGUCGcggcuGCGCAugcggUGCGCCGGCGCGCUu -3'
miRNA:   3'- agUAGC-----UGCGU-----GCGUGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 48122 0.66 0.858269
Target:  5'- cUCAaCGuGCGCGCGCugcucACCGACGC-CUc -3'
miRNA:   3'- -AGUaGC-UGCGUGCG-----UGGCUGCGcGAu -5'
25042 3' -57.1 NC_005336.1 + 48180 0.69 0.694107
Target:  5'- gUCGUCGGCgacaaccucGCGCGCGCCuucGAgcCGCGCg- -3'
miRNA:   3'- -AGUAGCUG---------CGUGCGUGG---CU--GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 49348 0.7 0.633047
Target:  5'- cCAUCGcccGCGCGCGCGugaccagcuCCGGCGcCGCg- -3'
miRNA:   3'- aGUAGC---UGCGUGCGU---------GGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 49724 0.73 0.446294
Target:  5'- cCAUCaACGC-CGCGCUgaaGACGCGCUAc -3'
miRNA:   3'- aGUAGcUGCGuGCGUGG---CUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 49790 0.66 0.865865
Target:  5'- gCAUCGcgaGCGCGCGCuCCGAgaaGCaGCUc -3'
miRNA:   3'- aGUAGC---UGCGUGCGuGGCUg--CG-CGAu -5'
25042 3' -57.1 NC_005336.1 + 49947 0.75 0.345202
Target:  5'- -gGUCGGCGCAgCGCAUCuGCGCGCa- -3'
miRNA:   3'- agUAGCUGCGU-GCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 50288 0.73 0.455445
Target:  5'- gUCGgccgCGAUGCccuGCGCGCgGGCGCGCg- -3'
miRNA:   3'- -AGUa---GCUGCG---UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 50292 0.73 0.455445
Target:  5'- gCcgCGAUGCccuGCGCGCgGGCGCGCg- -3'
miRNA:   3'- aGuaGCUGCG---UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 50488 0.69 0.673867
Target:  5'- gUCuauggCGACGCGCgGCACgcaGACGgGCUAg -3'
miRNA:   3'- -AGua---GCUGCGUG-CGUGg--CUGCgCGAU- -5'
25042 3' -57.1 NC_005336.1 + 50748 0.76 0.337555
Target:  5'- uUCAaCGugGUgccGCGCACCauGACGCGCUAc -3'
miRNA:   3'- -AGUaGCugCG---UGCGUGG--CUGCGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.