miRNA display CGI


Results 21 - 40 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 131234 0.68 0.724056
Target:  5'- cUCAUCGGCaUggGCGCCGACGUGa-- -3'
miRNA:   3'- -AGUAGCUGcGugCGUGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 130603 0.76 0.333027
Target:  5'- cCAUCGcucgcgacugguggaGCGCGCGCugCG-CGCGCUGc -3'
miRNA:   3'- aGUAGC---------------UGCGUGCGugGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 130347 0.69 0.663692
Target:  5'- aCGUggUGGCGCGCGCGCCGA-GCGa-- -3'
miRNA:   3'- aGUA--GCUGCGUGCGUGGCUgCGCgau -5'
25042 3' -57.1 NC_005336.1 + 129394 0.8 0.195283
Target:  5'- cCGUCGuGCGCGCGCugcuggacGCCGGCGCGCg- -3'
miRNA:   3'- aGUAGC-UGCGUGCG--------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 129250 1.07 0.002683
Target:  5'- uUCAUCGACGCACGCACCGACGCGCUAg -3'
miRNA:   3'- -AGUAGCUGCGUGCGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 129189 0.7 0.602395
Target:  5'- ----gGGCGCGCGCGCCGcCGCGg-- -3'
miRNA:   3'- aguagCUGCGUGCGUGGCuGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 128807 0.67 0.772267
Target:  5'- cUCAUCGugG-ACGaCACCuuCGCGCa- -3'
miRNA:   3'- -AGUAGCugCgUGC-GUGGcuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 128137 0.78 0.255462
Target:  5'- ---gCGGCGCACGCGCCugGGCGCGCc- -3'
miRNA:   3'- aguaGCUGCGUGCGUGG--CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 128031 0.74 0.385274
Target:  5'- gCGUgaUGGCGCugGCGCugcgCGGCGCGCUAg -3'
miRNA:   3'- aGUA--GCUGCGugCGUG----GCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 127920 0.7 0.62282
Target:  5'- aCAaCuGCGCGCGCGCCG-UGCGCa- -3'
miRNA:   3'- aGUaGcUGCGUGCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 127578 0.68 0.747515
Target:  5'- aUCAUcCGGCGCACGgcgcugcacuacCACUGcgaguccuucaagacGCGCGCUAg -3'
miRNA:   3'- -AGUA-GCUGCGUGC------------GUGGC---------------UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 127542 0.68 0.724056
Target:  5'- cUCAUCGccGCGgGCGCAgacCCGcucGCGCGCg- -3'
miRNA:   3'- -AGUAGC--UGCgUGCGU---GGC---UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 127422 0.7 0.633047
Target:  5'- cCggUGGCGCuCGCGCUGAuCGCGCUc -3'
miRNA:   3'- aGuaGCUGCGuGCGUGGCU-GCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 127164 0.68 0.762838
Target:  5'- gCAgaGGC-CGCGCACgCGGCGCGCg- -3'
miRNA:   3'- aGUagCUGcGUGCGUG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 126988 0.71 0.561863
Target:  5'- aCGUgGAgCGCAUGCGCCGGC-UGCUGg -3'
miRNA:   3'- aGUAgCU-GCGUGCGUGGCUGcGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 126754 0.69 0.718115
Target:  5'- cCGUCGugGCAgGCGucgguaugcugcugcUCGGCGUGCg- -3'
miRNA:   3'- aGUAGCugCGUgCGU---------------GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 126698 0.67 0.790742
Target:  5'- cCGUCG-CGCGCGUGCaCGGCaCGCg- -3'
miRNA:   3'- aGUAGCuGCGUGCGUG-GCUGcGCGau -5'
25042 3' -57.1 NC_005336.1 + 126526 0.69 0.684008
Target:  5'- gCggCGACGCGCGCcugGCCGAgaUGaCGCUGa -3'
miRNA:   3'- aGuaGCUGCGUGCG---UGGCU--GC-GCGAU- -5'
25042 3' -57.1 NC_005336.1 + 125934 0.75 0.377018
Target:  5'- gUCG-CGGCGCcgccguGCGaCACCGACGUGCUGc -3'
miRNA:   3'- -AGUaGCUGCG------UGC-GUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 125794 0.66 0.861332
Target:  5'- gCAUCGAgaCGCACGuCGCgGaggggaaccucgaucGCGCGCUc -3'
miRNA:   3'- aGUAGCU--GCGUGC-GUGgC---------------UGCGCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.