miRNA display CGI


Results 41 - 60 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 125693 0.67 0.772267
Target:  5'- ---cCGACGCcCGCcgaGCCGGCgGCGCUc -3'
miRNA:   3'- aguaGCUGCGuGCG---UGGCUG-CGCGAu -5'
25042 3' -57.1 NC_005336.1 + 125551 0.73 0.446294
Target:  5'- aUCGUCGAuCGCGCGCAcgagcCCGGCG-GCUc -3'
miRNA:   3'- -AGUAGCU-GCGUGCGU-----GGCUGCgCGAu -5'
25042 3' -57.1 NC_005336.1 + 125327 0.68 0.753293
Target:  5'- -aGUgGGCGCACaaCGCgGACGUGCUGg -3'
miRNA:   3'- agUAgCUGCGUGc-GUGgCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 124919 0.72 0.493019
Target:  5'- ----aGGCGCGCGCGCgaCGACGUGCUc -3'
miRNA:   3'- aguagCUGCGUGCGUG--GCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 124775 0.74 0.419471
Target:  5'- ---cCGGgGCGCGCGCCGACGcCGCc- -3'
miRNA:   3'- aguaGCUgCGUGCGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 124698 0.71 0.541864
Target:  5'- gCGUCGGCGgGCGCcgACCGcUGCGCg- -3'
miRNA:   3'- aGUAGCUGCgUGCG--UGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 124647 0.66 0.834283
Target:  5'- gUCAUggagGACGUggGCGgCGGCGUGCUGc -3'
miRNA:   3'- -AGUAg---CUGCGugCGUgGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 124616 0.7 0.633047
Target:  5'- aCAaCGACuGCGCGCgccaggGCCGugGCGCc- -3'
miRNA:   3'- aGUaGCUG-CGUGCG------UGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 124573 0.67 0.817362
Target:  5'- aCGUCGACGC-CuCcCCGACGCGg-- -3'
miRNA:   3'- aGUAGCUGCGuGcGuGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 124414 0.66 0.850469
Target:  5'- cUCGUgGACGCGguguCGCGucucguguguCCGuGCGCGCUGc -3'
miRNA:   3'- -AGUAgCUGCGU----GCGU----------GGC-UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 124166 0.68 0.743642
Target:  5'- ---gCGGCgGCACGCucUCGGCGCGCg- -3'
miRNA:   3'- aguaGCUG-CGUGCGu-GGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 123958 0.69 0.663692
Target:  5'- cUCAUCGcCGCGgGCGCgGACGUGa-- -3'
miRNA:   3'- -AGUAGCuGCGUgCGUGgCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 123650 0.74 0.38861
Target:  5'- uUCAUCGACGCggGCGUgagcauggccacgucGCgCGACGCGCg- -3'
miRNA:   3'- -AGUAGCUGCG--UGCG---------------UG-GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 123471 0.66 0.865865
Target:  5'- gCggCGAgGCGCGCAa-GACGcCGCUGc -3'
miRNA:   3'- aGuaGCUgCGUGCGUggCUGC-GCGAU- -5'
25042 3' -57.1 NC_005336.1 + 123218 0.68 0.724056
Target:  5'- ---gCGGguuCGCGCGCGCCGugGUGUUc -3'
miRNA:   3'- aguaGCU---GCGUGCGUGGCugCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 123207 0.67 0.781572
Target:  5'- aCGUCGugGaCGCGCugcuggacGCCGGCGCa--- -3'
miRNA:   3'- aGUAGCugC-GUGCG--------UGGCUGCGcgau -5'
25042 3' -57.1 NC_005336.1 + 123062 0.68 0.743642
Target:  5'- aCAagGcGCGCGCGCGCauggaGACGCuGCUGg -3'
miRNA:   3'- aGUagC-UGCGUGCGUGg----CUGCG-CGAU- -5'
25042 3' -57.1 NC_005336.1 + 122921 0.66 0.82591
Target:  5'- aCGUgCGGCaggcCACGCugCG-CGCGCUGc -3'
miRNA:   3'- aGUA-GCUGc---GUGCGugGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 122535 0.68 0.762838
Target:  5'- gCGUgGACGCGaccCGCGCgCG-CGCGCUc -3'
miRNA:   3'- aGUAgCUGCGU---GCGUG-GCuGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 121156 0.7 0.612601
Target:  5'- gCcgCGACGCA-GUGCgGGCGCGCUc -3'
miRNA:   3'- aGuaGCUGCGUgCGUGgCUGCGCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.