miRNA display CGI


Results 61 - 80 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 121077 0.66 0.82591
Target:  5'- gCAUgGACGaGCGCgACCGGCGCcgGCa- -3'
miRNA:   3'- aGUAgCUGCgUGCG-UGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 120613 0.67 0.790742
Target:  5'- cCGUCGAgaUGCuCGCGCaGAUGCGCg- -3'
miRNA:   3'- aGUAGCU--GCGuGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 120474 0.78 0.231983
Target:  5'- aUCGUCGAgGCGCGCcCCGAgauggccucCGCGCUGu -3'
miRNA:   3'- -AGUAGCUgCGUGCGuGGCU---------GCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 120233 0.73 0.455445
Target:  5'- cUCG-CGGCG-GCGCugCGGCGCGCUc -3'
miRNA:   3'- -AGUaGCUGCgUGCGugGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 120040 0.71 0.561863
Target:  5'- cCGUCGccGCGgGCgGCACCGAgCGCGCg- -3'
miRNA:   3'- aGUAGC--UGCgUG-CGUGGCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 118672 0.66 0.865865
Target:  5'- gCAgccCGcCGUGCaCGCCGGCGCGCa- -3'
miRNA:   3'- aGUa--GCuGCGUGcGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 117135 0.66 0.865865
Target:  5'- cUCA-CGAC-CGCGCGCaCGACGCcgggaacgcagGCUGg -3'
miRNA:   3'- -AGUaGCUGcGUGCGUG-GCUGCG-----------CGAU- -5'
25042 3' -57.1 NC_005336.1 + 115896 0.67 0.772267
Target:  5'- cCcgCGGcCGCGCGCGCCccGACGaCGCc- -3'
miRNA:   3'- aGuaGCU-GCGUGCGUGG--CUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 115716 0.67 0.799769
Target:  5'- -gAUCGAcccgcCGUACGagGCCGugGCGCa- -3'
miRNA:   3'- agUAGCU-----GCGUGCg-UGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 115682 0.68 0.724056
Target:  5'- aCGU-GACGCccgauaucAUGCGCCG-CGCGCUGg -3'
miRNA:   3'- aGUAgCUGCG--------UGCGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 115536 0.7 0.62282
Target:  5'- ----aGACGCGCGCACgGGCgaGCGCg- -3'
miRNA:   3'- aguagCUGCGUGCGUGgCUG--CGCGau -5'
25042 3' -57.1 NC_005336.1 + 115408 0.66 0.858269
Target:  5'- gCGUUGGCGCGCGCGagGuACGUGUa- -3'
miRNA:   3'- aGUAGCUGCGUGCGUggC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 114399 0.68 0.766624
Target:  5'- -gAUCGACGCggcgguggccggcgaGCGCACgGAgCGCGUg- -3'
miRNA:   3'- agUAGCUGCG---------------UGCGUGgCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 113449 0.75 0.368881
Target:  5'- cUCcgCGGCGCGCGCGCCcGGCGaccgcgucaCGCUGg -3'
miRNA:   3'- -AGuaGCUGCGUGCGUGG-CUGC---------GCGAU- -5'
25042 3' -57.1 NC_005336.1 + 112336 0.67 0.781572
Target:  5'- aCAUCGcucagcCGCugGCGUgGACGCGCg- -3'
miRNA:   3'- aGUAGCu-----GCGugCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 112309 0.71 0.592212
Target:  5'- ---aCGugGUGCGCGCgGACGCGgUGg -3'
miRNA:   3'- aguaGCugCGUGCGUGgCUGCGCgAU- -5'
25042 3' -57.1 NC_005336.1 + 111188 0.68 0.753293
Target:  5'- cUCAUCGcCGUugGCugCGugGC-Cg- -3'
miRNA:   3'- -AGUAGCuGCGugCGugGCugCGcGau -5'
25042 3' -57.1 NC_005336.1 + 111018 0.69 0.71414
Target:  5'- aCAUgGACGCGCaGCGCgugguCGAgGCGCUc -3'
miRNA:   3'- aGUAgCUGCGUG-CGUG-----GCUgCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 110846 0.66 0.842471
Target:  5'- cUCGUCGGCGaaguCGUAgCaGAUGCGCUc -3'
miRNA:   3'- -AGUAGCUGCgu--GCGUgG-CUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 109930 0.7 0.643274
Target:  5'- gCGUCGACGaCGuCGCgACCuGCGCGCg- -3'
miRNA:   3'- aGUAGCUGC-GU-GCG-UGGcUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.