miRNA display CGI


Results 81 - 100 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 109738 0.66 0.865865
Target:  5'- uUCG-CGcucACGUGCGCGCCGuggacggccuGCGCGCa- -3'
miRNA:   3'- -AGUaGC---UGCGUGCGUGGC----------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 109489 0.67 0.817362
Target:  5'- -uGUCcaGGCGCGCGCggcaGCCGAagaaGCGCg- -3'
miRNA:   3'- agUAG--CUGCGUGCG----UGGCUg---CGCGau -5'
25042 3' -57.1 NC_005336.1 + 109376 0.74 0.418594
Target:  5'- uUCGUCGGCGCGgagcuCGCGCagcuccgCGGCGCGCa- -3'
miRNA:   3'- -AGUAGCUGCGU-----GCGUG-------GCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 109234 0.67 0.817362
Target:  5'- uUCGUCGACGCcauCGUgGCCGGCG-GCc- -3'
miRNA:   3'- -AGUAGCUGCGu--GCG-UGGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 109177 0.7 0.643274
Target:  5'- -gGUCGAa-CACGCGCCGguccACGCGCg- -3'
miRNA:   3'- agUAGCUgcGUGCGUGGC----UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 106930 0.67 0.808646
Target:  5'- aCcgCGcCGC-CGCGCUGGUGCGCUGc -3'
miRNA:   3'- aGuaGCuGCGuGCGUGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 106419 0.77 0.274324
Target:  5'- cUCAagGACGCGgagaGCGCCGACGUGCUc -3'
miRNA:   3'- -AGUagCUGCGUg---CGUGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 106275 0.67 0.820802
Target:  5'- gUCGUCGACgaggagcugcuguguGCgAUGCGCCGGCGCu--- -3'
miRNA:   3'- -AGUAGCUG---------------CG-UGCGUGGCUGCGcgau -5'
25042 3' -57.1 NC_005336.1 + 106159 0.68 0.733893
Target:  5'- ---gCGGCgGCACGCGCUacgacauaGACGCGCg- -3'
miRNA:   3'- aguaGCUG-CGUGCGUGG--------CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 106008 0.69 0.71414
Target:  5'- cUCGUCGACG---GCGCCGAgCGCGUg- -3'
miRNA:   3'- -AGUAGCUGCgugCGUGGCU-GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 105581 0.69 0.684008
Target:  5'- aCAUCGuGCGCAcCGUaaugacugaaaaGCCGGCGUGCg- -3'
miRNA:   3'- aGUAGC-UGCGU-GCG------------UGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 105580 0.67 0.772267
Target:  5'- gUCAccUCGGCGC-CGgGCCGGCG-GCa- -3'
miRNA:   3'- -AGU--AGCUGCGuGCgUGGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 105484 0.74 0.41075
Target:  5'- aCG-CGGgGCugGCugCGACGCGCa- -3'
miRNA:   3'- aGUaGCUgCGugCGugGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 104731 0.67 0.799769
Target:  5'- cCAggCGAUGuCGUGCACCGACGCGa-- -3'
miRNA:   3'- aGUa-GCUGC-GUGCGUGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 104671 0.72 0.522107
Target:  5'- aCAUCGAguuCGCGCgGCGCUGcuACGCGCUc -3'
miRNA:   3'- aGUAGCU---GCGUG-CGUGGC--UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 104358 0.67 0.799769
Target:  5'- cUCAcCGACaaggucaagguGCGCGCGCUGACcguGCGCg- -3'
miRNA:   3'- -AGUaGCUG-----------CGUGCGUGGCUG---CGCGau -5'
25042 3' -57.1 NC_005336.1 + 103756 0.69 0.694107
Target:  5'- uUCuUCgGGCGCACGCAg-GACGCGCa- -3'
miRNA:   3'- -AGuAG-CUGCGUGCGUggCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 103405 0.69 0.672851
Target:  5'- aUCGUgGACGCGuucgugcucgaccUGCGCCGGCGCaaGCg- -3'
miRNA:   3'- -AGUAgCUGCGU-------------GCGUGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 103246 0.66 0.858269
Target:  5'- cCcgCGACGCggcucACGCccAgCGGCGCGCa- -3'
miRNA:   3'- aGuaGCUGCG-----UGCG--UgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 102587 0.66 0.865865
Target:  5'- -gAUCGA-GCGCGC-CgGGCgGCGCUAc -3'
miRNA:   3'- agUAGCUgCGUGCGuGgCUG-CGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.