miRNA display CGI


Results 101 - 120 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 102141 0.69 0.673867
Target:  5'- cUCAUCGACGcCGCGCcgccggacACCGAgaaggacgagguUGCGCa- -3'
miRNA:   3'- -AGUAGCUGC-GUGCG--------UGGCU------------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 101735 0.68 0.733893
Target:  5'- cUCGUCG-CGCugGaGCCG-CGCGCc- -3'
miRNA:   3'- -AGUAGCuGCGugCgUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 101567 0.81 0.147871
Target:  5'- cUCggCGACGCGCGCGCCGggcgcgGCGCGCa- -3'
miRNA:   3'- -AGuaGCUGCGUGCGUGGC------UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 101183 0.7 0.633047
Target:  5'- -gGUguGCGCGCGCACCagcguGACGCGCg- -3'
miRNA:   3'- agUAgcUGCGUGCGUGG-----CUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 100878 0.72 0.512333
Target:  5'- uUCG-CGGCGCGCGCGCgguCGGCGCGg-- -3'
miRNA:   3'- -AGUaGCUGCGUGCGUG---GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 100783 0.69 0.694107
Target:  5'- uUCGagGAgGuCGCGCGCCGgggcucgcggACGCGCUGg -3'
miRNA:   3'- -AGUagCUgC-GUGCGUGGC----------UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 100712 0.72 0.493019
Target:  5'- aCAUCG-CGCACaGCGCCGAgGCGg-- -3'
miRNA:   3'- aGUAGCuGCGUG-CGUGGCUgCGCgau -5'
25042 3' -57.1 NC_005336.1 + 100414 0.7 0.612601
Target:  5'- ---aCGACGgGCgGCGCCGcACGCGCg- -3'
miRNA:   3'- aguaGCUGCgUG-CGUGGC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 99609 0.69 0.711151
Target:  5'- cUCAagGGcCGCGCGCugcgcgccgaccacAUCGACGCGCUu -3'
miRNA:   3'- -AGUagCU-GCGUGCG--------------UGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 99519 0.75 0.352972
Target:  5'- gCG-CGGCGCGC-CGCCGGCGCGCc- -3'
miRNA:   3'- aGUaGCUGCGUGcGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 99504 0.66 0.82591
Target:  5'- -gGUCGGCGCGcCGCuggauagcggACCG-CGCGCc- -3'
miRNA:   3'- agUAGCUGCGU-GCG----------UGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 99369 0.74 0.402142
Target:  5'- gCGUCGcGCGCACGCugCGuguGCGCGUg- -3'
miRNA:   3'- aGUAGC-UGCGUGCGugGC---UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 99063 0.66 0.842471
Target:  5'- aUC-UCGGaGCGCGaCugCGugGUGCUGu -3'
miRNA:   3'- -AGuAGCUgCGUGC-GugGCugCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 98797 0.67 0.790742
Target:  5'- -gGUCGACGCgGCGCccucCUGGCGCaGCUu -3'
miRNA:   3'- agUAGCUGCG-UGCGu---GGCUGCG-CGAu -5'
25042 3' -57.1 NC_005336.1 + 98723 0.66 0.850469
Target:  5'- gCAUCcuGGCGCGCGUGCaCGccucgcuggacaACGCGCUc -3'
miRNA:   3'- aGUAG--CUGCGUGCGUG-GC------------UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 98666 0.67 0.808646
Target:  5'- -gAUCcGCGCACacgGCAgCGGCGCGCc- -3'
miRNA:   3'- agUAGcUGCGUG---CGUgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 98617 0.77 0.274324
Target:  5'- -gAUCcGCGCGCGCGCCGcaGCGCGCg- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGC--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 98583 0.69 0.71414
Target:  5'- aCGUCGGCGUACGCGuu--CGCGCa- -3'
miRNA:   3'- aGUAGCUGCGUGCGUggcuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 97952 0.66 0.842471
Target:  5'- -gGUC-ACGCGCGCACUG-CGCGaCa- -3'
miRNA:   3'- agUAGcUGCGUGCGUGGCuGCGC-Gau -5'
25042 3' -57.1 NC_005336.1 + 97849 0.78 0.237677
Target:  5'- gCG-CGugGCgacaGCGCACCGACGCGCa- -3'
miRNA:   3'- aGUaGCugCG----UGCGUGGCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.