miRNA display CGI


Results 101 - 120 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 16328 0.7 0.62282
Target:  5'- gCAUCGAgCGCACgGCGCCcuccgcggcgggGugGCGCg- -3'
miRNA:   3'- aGUAGCU-GCGUG-CGUGG------------CugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 17280 0.7 0.62282
Target:  5'- gCGUCcACGCGcCGCACCGcUGCGUUGa -3'
miRNA:   3'- aGUAGcUGCGU-GCGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 31743 0.7 0.62282
Target:  5'- gCGUCGAUGCugaGC-CCGAgGCGCa- -3'
miRNA:   3'- aGUAGCUGCGug-CGuGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 127920 0.7 0.62282
Target:  5'- aCAaCuGCGCGCGCGCCG-UGCGCa- -3'
miRNA:   3'- aGUaGcUGCGUGCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 49348 0.7 0.633047
Target:  5'- cCAUCGcccGCGCGCGCGugaccagcuCCGGCGcCGCg- -3'
miRNA:   3'- aGUAGC---UGCGUGCGU---------GGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 126988 0.71 0.561863
Target:  5'- aCGUgGAgCGCAUGCGCCGGC-UGCUGg -3'
miRNA:   3'- aGUAgCU-GCGUGCGUGGCUGcGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 68301 0.71 0.561863
Target:  5'- ----gGGCGUGCGUGCUGGCGCGCg- -3'
miRNA:   3'- aguagCUGCGUGCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 48109 0.73 0.446294
Target:  5'- -gGUCGcggcuGCGCAugcggUGCGCCGGCGCGCUu -3'
miRNA:   3'- agUAGC-----UGCGU-----GCGUGGCUGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 132425 0.73 0.446294
Target:  5'- -gAUCcuCGCGCGCGCCGGCGgGCg- -3'
miRNA:   3'- agUAGcuGCGUGCGUGGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 50292 0.73 0.455445
Target:  5'- gCcgCGAUGCccuGCGCGCgGGCGCGCg- -3'
miRNA:   3'- aGuaGCUGCG---UGCGUGgCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 97240 0.73 0.474045
Target:  5'- cUCAUCGccACGCACG-GCCGcCGCGCg- -3'
miRNA:   3'- -AGUAGC--UGCGUGCgUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 100712 0.72 0.493019
Target:  5'- aCAUCG-CGCACaGCGCCGAgGCGg-- -3'
miRNA:   3'- aGUAGCuGCGUG-CGUGGCUgCGCgau -5'
25042 3' -57.1 NC_005336.1 + 3940 0.72 0.502635
Target:  5'- gCcgCGGCGCA-GCGCCG-CGCGCa- -3'
miRNA:   3'- aGuaGCUGCGUgCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 76781 0.72 0.502635
Target:  5'- -aGUCGAUGUAgGCAgCGuGCGCGCUGg -3'
miRNA:   3'- agUAGCUGCGUgCGUgGC-UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 56156 0.72 0.51136
Target:  5'- cCGaUGGCGCcCGCggacgaaGCCGACGCGCUGg -3'
miRNA:   3'- aGUaGCUGCGuGCG-------UGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 100878 0.72 0.512333
Target:  5'- uUCG-CGGCGCGCGCGCgguCGGCGCGg-- -3'
miRNA:   3'- -AGUaGCUGCGUGCGUG---GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 104671 0.72 0.522107
Target:  5'- aCAUCGAguuCGCGCgGCGCUGcuACGCGCUc -3'
miRNA:   3'- aGUAGCU---GCGUG-CGUGGC--UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 67817 0.72 0.522107
Target:  5'- ---aCGAUGCACGCGCgCGgGCGCGCc- -3'
miRNA:   3'- aguaGCUGCGUGCGUG-GC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 134357 0.72 0.522107
Target:  5'- cUCGcgcgCGugGCGacCGCGCUGACGCGCc- -3'
miRNA:   3'- -AGUa---GCugCGU--GCGUGGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 124698 0.71 0.541864
Target:  5'- gCGUCGGCGgGCGCcgACCGcUGCGCg- -3'
miRNA:   3'- aGUAGCUGCgUGCG--UGGCuGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.