miRNA display CGI


Results 81 - 100 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 109234 0.67 0.817362
Target:  5'- uUCGUCGACGCcauCGUgGCCGGCG-GCc- -3'
miRNA:   3'- -AGUAGCUGCGu--GCG-UGGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 91337 0.67 0.817362
Target:  5'- uUCAUgaCGGCGUccagcuGCGCGCCGGCGUugGCc- -3'
miRNA:   3'- -AGUA--GCUGCG------UGCGUGGCUGCG--CGau -5'
25042 3' -57.1 NC_005336.1 + 71963 0.67 0.808646
Target:  5'- cUCGUgGAgCGCgaccaccgcgGCGCGCCcGCGCGCg- -3'
miRNA:   3'- -AGUAgCU-GCG----------UGCGUGGcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 39301 0.67 0.808646
Target:  5'- cUCcgCGAgCGCgaggaagguGCGCACCGAgcggcgcuUGCGCUGc -3'
miRNA:   3'- -AGuaGCU-GCG---------UGCGUGGCU--------GCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 104731 0.67 0.799769
Target:  5'- cCAggCGAUGuCGUGCACCGACGCGa-- -3'
miRNA:   3'- aGUa-GCUGC-GUGCGUGGCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 5405 0.67 0.790742
Target:  5'- cUCcgCGAUGC-CGUGCCGGCuCGCg- -3'
miRNA:   3'- -AGuaGCUGCGuGCGUGGCUGcGCGau -5'
25042 3' -57.1 NC_005336.1 + 89394 0.67 0.781572
Target:  5'- aCGUCGccCGcCGCGCAgCCGGCGgGCg- -3'
miRNA:   3'- aGUAGCu-GC-GUGCGU-GGCUGCgCGau -5'
25042 3' -57.1 NC_005336.1 + 98723 0.66 0.850469
Target:  5'- gCAUCcuGGCGCGCGUGCaCGccucgcuggacaACGCGCUc -3'
miRNA:   3'- aGUAG--CUGCGUGCGUG-GC------------UGCGCGAu -5'
25042 3' -57.1 NC_005336.1 + 59183 0.66 0.850469
Target:  5'- aCAU--GCGCGCGCGCaaGCGCGCc- -3'
miRNA:   3'- aGUAgcUGCGUGCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 72081 0.66 0.858269
Target:  5'- gCAU-GAUGCGCGCGCUGuucccgagcCGCGCa- -3'
miRNA:   3'- aGUAgCUGCGUGCGUGGCu--------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 94499 0.67 0.772267
Target:  5'- aCGcCGAgGCGCaGUGCCG-CGCGCUGc -3'
miRNA:   3'- aGUaGCUgCGUG-CGUGGCuGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 3512 0.67 0.769452
Target:  5'- gCAgcggCGGCGCcgcggggcggaagaGCGCGCCGA-GCGCg- -3'
miRNA:   3'- aGUa---GCUGCG--------------UGCGUGGCUgCGCGau -5'
25042 3' -57.1 NC_005336.1 + 136011 0.68 0.762838
Target:  5'- gCcgCGGCGCugGCgGCCGcgggcCGCGCg- -3'
miRNA:   3'- aGuaGCUGCGugCG-UGGCu----GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 15934 0.68 0.753293
Target:  5'- gCGUUGAUGUccGCGcCGCCGGCGaugaGCUGg -3'
miRNA:   3'- aGUAGCUGCG--UGC-GUGGCUGCg---CGAU- -5'
25042 3' -57.1 NC_005336.1 + 60761 0.68 0.743642
Target:  5'- aCGUCuuCGUGCGCAUCGACGaCGUg- -3'
miRNA:   3'- aGUAGcuGCGUGCGUGGCUGC-GCGau -5'
25042 3' -57.1 NC_005336.1 + 117135 0.66 0.865865
Target:  5'- cUCA-CGAC-CGCGCGCaCGACGCcgggaacgcagGCUGg -3'
miRNA:   3'- -AGUaGCUGcGUGCGUG-GCUGCG-----------CGAU- -5'
25042 3' -57.1 NC_005336.1 + 63746 0.66 0.865115
Target:  5'- aCGUCGACGgcuccgcggccuuCGCGCGCaaGCGCGUg- -3'
miRNA:   3'- aGUAGCUGC-------------GUGCGUGgcUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 56599 0.66 0.858269
Target:  5'- cCGUCGucCGCGCGCcCUGGCucGCGCc- -3'
miRNA:   3'- aGUAGCu-GCGUGCGuGGCUG--CGCGau -5'
25042 3' -57.1 NC_005336.1 + 16124 0.66 0.858269
Target:  5'- gCGUCcGCGCGCGuCGCgCGACGUGg-- -3'
miRNA:   3'- aGUAGcUGCGUGC-GUG-GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 48122 0.66 0.858269
Target:  5'- cUCAaCGuGCGCGCGCugcucACCGACGC-CUc -3'
miRNA:   3'- -AGUaGC-UGCGUGCG-----UGGCUGCGcGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.