miRNA display CGI


Results 21 - 40 of 397 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 3' -57.1 NC_005336.1 + 115408 0.66 0.858269
Target:  5'- gCGUUGGCGCGCGCGagGuACGUGUa- -3'
miRNA:   3'- aGUAGCUGCGUGCGUggC-UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 30207 0.66 0.858269
Target:  5'- cCGUgGACGUGC-CGCCGGaccCGCGCg- -3'
miRNA:   3'- aGUAgCUGCGUGcGUGGCU---GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 16395 0.66 0.858269
Target:  5'- aCGUCcAgGCGCGCGCCGcCGUccacGCUGu -3'
miRNA:   3'- aGUAGcUgCGUGCGUGGCuGCG----CGAU- -5'
25042 3' -57.1 NC_005336.1 + 56599 0.66 0.858269
Target:  5'- cCGUCGucCGCGCGCcCUGGCucGCGCc- -3'
miRNA:   3'- aGUAGCu-GCGUGCGuGGCUG--CGCGau -5'
25042 3' -57.1 NC_005336.1 + 74563 0.66 0.858269
Target:  5'- cCGaCGACGCGCGaCAUgGgcACGCGCg- -3'
miRNA:   3'- aGUaGCUGCGUGC-GUGgC--UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 103246 0.66 0.858269
Target:  5'- cCcgCGACGCggcucACGCccAgCGGCGCGCa- -3'
miRNA:   3'- aGuaGCUGCG-----UGCG--UgGCUGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 16124 0.66 0.858269
Target:  5'- gCGUCcGCGCGCGuCGCgCGACGUGg-- -3'
miRNA:   3'- aGUAGcUGCGUGC-GUG-GCUGCGCgau -5'
25042 3' -57.1 NC_005336.1 + 14936 0.66 0.858269
Target:  5'- gCGcCGGCGCACGUGCuCGcCGUGCc- -3'
miRNA:   3'- aGUaGCUGCGUGCGUG-GCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 24393 0.66 0.858269
Target:  5'- --cUCGACGUgguccaugcuggGCGCGCCGAC-CGUg- -3'
miRNA:   3'- aguAGCUGCG------------UGCGUGGCUGcGCGau -5'
25042 3' -57.1 NC_005336.1 + 93529 0.66 0.858269
Target:  5'- --cUCGcCGCA-GCGCCG-CGCGCa- -3'
miRNA:   3'- aguAGCuGCGUgCGUGGCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 70884 0.66 0.858269
Target:  5'- -gGUCG-UGCGCGCgACCGAgcucgcgauCGCGCg- -3'
miRNA:   3'- agUAGCuGCGUGCG-UGGCU---------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 48122 0.66 0.858269
Target:  5'- cUCAaCGuGCGCGCGCugcucACCGACGC-CUc -3'
miRNA:   3'- -AGUaGC-UGCGUGCG-----UGGCUGCGcGAu -5'
25042 3' -57.1 NC_005336.1 + 96401 0.66 0.858269
Target:  5'- gCggUGGCGCGCgGCGCgGuCGCGCg- -3'
miRNA:   3'- aGuaGCUGCGUG-CGUGgCuGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 95709 0.66 0.857498
Target:  5'- gCGUCcGCaGCACGCGCUGGgcggcgcCGCGCg- -3'
miRNA:   3'- aGUAGcUG-CGUGCGUGGCU-------GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 44116 0.66 0.85595
Target:  5'- gCGUUuguGCGCggaGCGCucgcggccgaguggGCCGACGCGCUGc -3'
miRNA:   3'- aGUAGc--UGCG---UGCG--------------UGGCUGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 41950 0.66 0.853613
Target:  5'- gCGUCGgugcgcugucgccacGCGCGCGCGuCCGcgagcuCGCGCa- -3'
miRNA:   3'- aGUAGC---------------UGCGUGCGU-GGCu-----GCGCGau -5'
25042 3' -57.1 NC_005336.1 + 51415 0.66 0.850469
Target:  5'- aUCGgauggCGGCGCcgacgACGC-CCGugGUGCa- -3'
miRNA:   3'- -AGUa----GCUGCG-----UGCGuGGCugCGCGau -5'
25042 3' -57.1 NC_005336.1 + 124414 0.66 0.850469
Target:  5'- cUCGUgGACGCGguguCGCGucucguguguCCGuGCGCGCUGc -3'
miRNA:   3'- -AGUAgCUGCGU----GCGU----------GGC-UGCGCGAU- -5'
25042 3' -57.1 NC_005336.1 + 83279 0.66 0.850469
Target:  5'- aUCuUCGcugcgaagagcuGCGCACGgGCCGcuggGCGCGCg- -3'
miRNA:   3'- -AGuAGC------------UGCGUGCgUGGC----UGCGCGau -5'
25042 3' -57.1 NC_005336.1 + 40584 0.66 0.850469
Target:  5'- gCGUCuuGCGCAugagcCGCGCgGGCGCGCc- -3'
miRNA:   3'- aGUAGc-UGCGU-----GCGUGgCUGCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.