miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25042 5' -62.7 NC_005336.1 + 50956 0.66 0.635607
Target:  5'- cGCCaugagcgGCGUgCGcCGGCGCGGCGGc-CGg -3'
miRNA:   3'- -CGGg------CGCGgGC-GCUGCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 12638 0.66 0.635607
Target:  5'- cGCgCCGCGUgCGCGgccucuGCGCGGCGcugCGc -3'
miRNA:   3'- -CG-GGCGCGgGCGC------UGCGUCGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 68382 0.66 0.635607
Target:  5'- cGCCgGCGgCCGCGcuguuCGCGGCGcuGggCGn -3'
miRNA:   3'- -CGGgCGCgGGCGCu----GCGUCGC--CaaGC- -5'
25042 5' -62.7 NC_005336.1 + 133521 0.66 0.635607
Target:  5'- cGCgCGCGCUcagCGUGAcCGCGGcCGGcgCGa -3'
miRNA:   3'- -CGgGCGCGG---GCGCU-GCGUC-GCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 81981 0.66 0.635607
Target:  5'- cGCCCGUGCUgGCcaugccccCGCGcCGGUUCa -3'
miRNA:   3'- -CGGGCGCGGgCGcu------GCGUcGCCAAGc -5'
25042 5' -62.7 NC_005336.1 + 61043 0.66 0.635607
Target:  5'- aGCCgGUGCagcuCCGCGACcagcCGGCGGUa-- -3'
miRNA:   3'- -CGGgCGCG----GGCGCUGc---GUCGCCAagc -5'
25042 5' -62.7 NC_005336.1 + 43465 0.66 0.634633
Target:  5'- gGUCgGCGCCCGCGAggacaaGCAggaggacgagcacGCGGagUUCGc -3'
miRNA:   3'- -CGGgCGCGGGCGCUg-----CGU-------------CGCC--AAGC- -5'
25042 5' -62.7 NC_005336.1 + 24032 0.66 0.629763
Target:  5'- cGUUCGCGCaCCGgaCGuccauggccccguacACGCAGCGGcgCGg -3'
miRNA:   3'- -CGGGCGCG-GGC--GC---------------UGCGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 123032 0.66 0.625867
Target:  5'- -aCCGCGUCCGCGAccuCGCgAGCaacUUCGa -3'
miRNA:   3'- cgGGCGCGGGCGCU---GCG-UCGcc-AAGC- -5'
25042 5' -62.7 NC_005336.1 + 37654 0.66 0.625867
Target:  5'- cUCgGUGUCCgGCGGCGCGGCG--UCGa -3'
miRNA:   3'- cGGgCGCGGG-CGCUGCGUCGCcaAGC- -5'
25042 5' -62.7 NC_005336.1 + 75630 0.66 0.625867
Target:  5'- cGCCUGgGUCCcagagcCGACGCAGCGccgCGa -3'
miRNA:   3'- -CGGGCgCGGGc-----GCUGCGUCGCcaaGC- -5'
25042 5' -62.7 NC_005336.1 + 68841 0.66 0.625867
Target:  5'- -aCCGCGCgCCGCaggugcauGugGCcacgaAGgGGUUCGg -3'
miRNA:   3'- cgGGCGCG-GGCG--------CugCG-----UCgCCAAGC- -5'
25042 5' -62.7 NC_005336.1 + 61862 0.66 0.625867
Target:  5'- gGCUCGCGCacgaccgCGCGGCGCgcgaggccgGGCGGa--- -3'
miRNA:   3'- -CGGGCGCGg------GCGCUGCG---------UCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 40437 0.66 0.625867
Target:  5'- cGCagCGUGCgCGCGACGCgcacgccggaGGCGGcgCa -3'
miRNA:   3'- -CGg-GCGCGgGCGCUGCG----------UCGCCaaGc -5'
25042 5' -62.7 NC_005336.1 + 73128 0.66 0.625867
Target:  5'- cGCCCaGCgGCCCGCG-CGUGcGuCGGUUgGu -3'
miRNA:   3'- -CGGG-CG-CGGGCGCuGCGU-C-GCCAAgC- -5'
25042 5' -62.7 NC_005336.1 + 113457 0.66 0.625867
Target:  5'- cGCgCGCGCCCgGCGAcCGCGucacGCuGGccUUCGg -3'
miRNA:   3'- -CGgGCGCGGG-CGCU-GCGU----CG-CC--AAGC- -5'
25042 5' -62.7 NC_005336.1 + 8687 0.66 0.625867
Target:  5'- gGCCC-CGUCgCGCGGCcuccGCAGCGGc--- -3'
miRNA:   3'- -CGGGcGCGG-GCGCUG----CGUCGCCaagc -5'
25042 5' -62.7 NC_005336.1 + 13630 0.66 0.625867
Target:  5'- gGgCUGCGgCgGCGGCaGCAGCGGgagCa -3'
miRNA:   3'- -CgGGCGCgGgCGCUG-CGUCGCCaa-Gc -5'
25042 5' -62.7 NC_005336.1 + 119037 0.66 0.625867
Target:  5'- uGCgCGCGCagauccgCGCGAC-CAGCGGcaCGg -3'
miRNA:   3'- -CGgGCGCGg------GCGCUGcGUCGCCaaGC- -5'
25042 5' -62.7 NC_005336.1 + 26541 0.66 0.625867
Target:  5'- gGCCgCGCGUccuccacgaCCGCGGUGCAGUGGa--- -3'
miRNA:   3'- -CGG-GCGCG---------GGCGCUGCGUCGCCaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.