miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 3' -50.5 NC_005336.1 + 10912 0.68 0.975979
Target:  5'- cGGCaGGAAG-CGGUGG-CagCGACGCa -3'
miRNA:   3'- -CUGcCCUUCuGCUACUaGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 113323 0.68 0.975979
Target:  5'- cGACGGGAAcGCGGccGUgUUCGcGCGCg -3'
miRNA:   3'- -CUGCCCUUcUGCUacUAgAAGC-UGCG- -5'
25043 3' -50.5 NC_005336.1 + 80228 0.69 0.973307
Target:  5'- --aGGuGAAGACGcgGcUCggCGGCGCg -3'
miRNA:   3'- cugCC-CUUCUGCuaCuAGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 97880 0.69 0.970426
Target:  5'- cGACGGGAucuccgAGACcGUGcUCUUCccgcggccgGACGCg -3'
miRNA:   3'- -CUGCCCU------UCUGcUACuAGAAG---------CUGCG- -5'
25043 3' -50.5 NC_005336.1 + 74149 0.69 0.967329
Target:  5'- gGGCGGGAAGGCuGcgGAgaaggaGACGCc -3'
miRNA:   3'- -CUGCCCUUCUG-CuaCUagaag-CUGCG- -5'
25043 3' -50.5 NC_005336.1 + 55949 0.7 0.956678
Target:  5'- aACGuGGAGGGCG-UGcgCUUCGugGa -3'
miRNA:   3'- cUGC-CCUUCUGCuACuaGAAGCugCg -5'
25043 3' -50.5 NC_005336.1 + 3664 0.7 0.94839
Target:  5'- cGGCGGGAGGGagg-GGUC-UCGACuGCg -3'
miRNA:   3'- -CUGCCCUUCUgcuaCUAGaAGCUG-CG- -5'
25043 3' -50.5 NC_005336.1 + 3664 0.7 0.94839
Target:  5'- cGGCGGGAGGGagg-GGUC-UCGACuGCg -3'
miRNA:   3'- -CUGCCCUUCUgcuaCUAGaAGCUG-CG- -5'
25043 3' -50.5 NC_005336.1 + 82394 0.71 0.934097
Target:  5'- cACGaGggGugGAUGAUCUUCauuagGGCGUu -3'
miRNA:   3'- cUGCcCuuCugCUACUAGAAG-----CUGCG- -5'
25043 3' -50.5 NC_005336.1 + 60164 0.71 0.928827
Target:  5'- cGCGGGAGGA-GAUGG-CUUgggugcCGGCGCg -3'
miRNA:   3'- cUGCCCUUCUgCUACUaGAA------GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 27680 0.71 0.923303
Target:  5'- -cUGGGGccgcgccauguGGGCGGUGAUCUUcaucgugcugCGGCGCu -3'
miRNA:   3'- cuGCCCU-----------UCUGCUACUAGAA----------GCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 110562 0.71 0.911494
Target:  5'- cACGGcGAAGGCGAgcaGcgCggCGGCGCa -3'
miRNA:   3'- cUGCC-CUUCUGCUa--CuaGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 47017 0.72 0.901322
Target:  5'- cGACGGcguggucgcggagaaGGAGGCGGUGGUg--CGGCGCg -3'
miRNA:   3'- -CUGCC---------------CUUCUGCUACUAgaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 99399 0.72 0.891901
Target:  5'- gGGCGGGAgAGuccuucgcgcGCGAgGA-CUUCGACGCg -3'
miRNA:   3'- -CUGCCCU-UC----------UGCUaCUaGAAGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 132857 0.72 0.877621
Target:  5'- aGGCGGGcgcAGACG-UGGUCUgCGACGa -3'
miRNA:   3'- -CUGCCCu--UCUGCuACUAGAaGCUGCg -5'
25043 3' -50.5 NC_005336.1 + 52207 0.73 0.86241
Target:  5'- cGACGGGAAGACGcucacgGUGAa---CGACGUg -3'
miRNA:   3'- -CUGCCCUUCUGC------UACUagaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 10602 0.73 0.837956
Target:  5'- cGAgGGGAGGACGAccg-CggCGGCGCg -3'
miRNA:   3'- -CUgCCCUUCUGCUacuaGaaGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 32263 0.74 0.829397
Target:  5'- cGCGcGGAAGcCGGUGuUCaUCGGCGCg -3'
miRNA:   3'- cUGC-CCUUCuGCUACuAGaAGCUGCG- -5'
25043 3' -50.5 NC_005336.1 + 68980 0.76 0.703097
Target:  5'- cAUGGugucgccguagaaGAAGACGAUGAccgUCUUCGugGCg -3'
miRNA:   3'- cUGCC-------------CUUCUGCUACU---AGAAGCugCG- -5'
25043 3' -50.5 NC_005336.1 + 10382 0.78 0.630734
Target:  5'- cGCGGGggGGCGGgcuGUCUUCGAagGCg -3'
miRNA:   3'- cUGCCCuuCUGCUac-UAGAAGCUg-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.