miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25043 5' -65.2 NC_005336.1 + 17262 0.66 0.495627
Target:  5'- aGCGCG-CGCgCGCGGgucgCGUCCacgCgCCg -3'
miRNA:   3'- -CGCGCgGCG-GCGCCa---GCAGGa--GgGGa -5'
25043 5' -65.2 NC_005336.1 + 87196 0.66 0.495627
Target:  5'- uCGCGUCaCCGUGGUCacguUCCgcagCCCCg -3'
miRNA:   3'- cGCGCGGcGGCGCCAGc---AGGa---GGGGa -5'
25043 5' -65.2 NC_005336.1 + 89280 0.66 0.483982
Target:  5'- gGCGCGucccgacaggccuuCCGCCGCGGgcgCGgcgCC-CCCa- -3'
miRNA:   3'- -CGCGC--------------GGCGGCGCCa--GCa--GGaGGGga -5'
25043 5' -65.2 NC_005336.1 + 34891 0.66 0.477766
Target:  5'- uGC-CGCCGCCGCGG-CGgcggCCCUc -3'
miRNA:   3'- -CGcGCGGCGGCGCCaGCaggaGGGGa -5'
25043 5' -65.2 NC_005336.1 + 93458 0.66 0.477766
Target:  5'- cGCgGCGCCGCCuGCGGcUGUCuCUCgagcaCCg -3'
miRNA:   3'- -CG-CGCGGCGG-CGCCaGCAG-GAGg----GGa -5'
25043 5' -65.2 NC_005336.1 + 67561 0.66 0.477766
Target:  5'- cCGCGCCGgCGCGGaaggCGUUgaacagCUCCgCCa -3'
miRNA:   3'- cGCGCGGCgGCGCCa---GCAG------GAGG-GGa -5'
25043 5' -65.2 NC_005336.1 + 50273 0.66 0.477766
Target:  5'- cGgGCaGCCGCCGCcGUCGgCCgcgaugCCCUg -3'
miRNA:   3'- -CgCG-CGGCGGCGcCAGCaGGa-----GGGGa -5'
25043 5' -65.2 NC_005336.1 + 9042 0.66 0.477766
Target:  5'- aGCaGCGCC-CCgaggGCGaGUCGUCCgUCUCCa -3'
miRNA:   3'- -CG-CGCGGcGG----CGC-CAGCAGG-AGGGGa -5'
25043 5' -65.2 NC_005336.1 + 15152 0.66 0.474231
Target:  5'- -aGCGCaGCCGCGGUCGgcggguucaggcgCCacggCCCUg -3'
miRNA:   3'- cgCGCGgCGGCGCCAGCa------------GGa---GGGGa -5'
25043 5' -65.2 NC_005336.1 + 79979 0.67 0.468954
Target:  5'- gGCGCGCCGCa-CGG-CGUCaUCgCCg -3'
miRNA:   3'- -CGCGCGGCGgcGCCaGCAGgAGgGGa -5'
25043 5' -65.2 NC_005336.1 + 129402 0.67 0.468954
Target:  5'- cGCGCGCUGCuggacgccggcgCGCGcGUgGaCCUCCCg- -3'
miRNA:   3'- -CGCGCGGCG------------GCGC-CAgCaGGAGGGga -5'
25043 5' -65.2 NC_005336.1 + 133993 0.67 0.468954
Target:  5'- cGUGCGCCcuGCCGcCGGagaUCGUgaCCUCCauCCUg -3'
miRNA:   3'- -CGCGCGG--CGGC-GCC---AGCA--GGAGG--GGA- -5'
25043 5' -65.2 NC_005336.1 + 124050 0.67 0.468954
Target:  5'- uCGCGCgGCCGCGGcgcUCGcUCagcgaagagCCCCg -3'
miRNA:   3'- cGCGCGgCGGCGCC---AGC-AGga-------GGGGa -5'
25043 5' -65.2 NC_005336.1 + 67291 0.67 0.468954
Target:  5'- cGUGCGCCG-CGCGGacaUCGUCaagCUCUUCg -3'
miRNA:   3'- -CGCGCGGCgGCGCC---AGCAG---GAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 50367 0.67 0.468954
Target:  5'- aGCGgucguuucUGUCGCCGCGGaCGUCUgCCUCg -3'
miRNA:   3'- -CGC--------GCGGCGGCGCCaGCAGGaGGGGa -5'
25043 5' -65.2 NC_005336.1 + 6682 0.67 0.468954
Target:  5'- aGCaGCGCCGCCaGCGG-CGUCa-CgCCg -3'
miRNA:   3'- -CG-CGCGGCGG-CGCCaGCAGgaGgGGa -5'
25043 5' -65.2 NC_005336.1 + 40294 0.67 0.468954
Target:  5'- gGCGCGCCG-CGCGGcCGcgcgaUUCUCCa -3'
miRNA:   3'- -CGCGCGGCgGCGCCaGCag---GAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 108835 0.67 0.460227
Target:  5'- gGCGCGCCGUCGCaGaUCGaCaUCCUCg -3'
miRNA:   3'- -CGCGCGGCGGCGcC-AGCaGgAGGGGa -5'
25043 5' -65.2 NC_005336.1 + 130168 0.67 0.460227
Target:  5'- uCGCGCaccagGCCGCGcUCGcgcgcaUCUUCCCCUc -3'
miRNA:   3'- cGCGCGg----CGGCGCcAGC------AGGAGGGGA- -5'
25043 5' -65.2 NC_005336.1 + 80248 0.67 0.460227
Target:  5'- gGCGCGCCcuccCUGUGGUCGcUgCUCgCCa -3'
miRNA:   3'- -CGCGCGGc---GGCGCCAGC-AgGAGgGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.