miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25044 5' -49.5 NC_005336.1 + 89253 0.66 0.995721
Target:  5'- ----cGGGCGaaaGGggGGUUCGccCGCu -3'
miRNA:   3'- uuaauUUCGCg--CCuuCCAGGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 18622 0.66 0.995721
Target:  5'- ---aGGGGCaGCGGucguGGUgCCgGAGCGCg -3'
miRNA:   3'- uuaaUUUCG-CGCCuu--CCA-GG-CUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 132988 0.66 0.995721
Target:  5'- ----cGAGCGCGaGuucguGGUCUGcGCGCu -3'
miRNA:   3'- uuaauUUCGCGC-Cuu---CCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 122689 0.66 0.995721
Target:  5'- ----cGAGCGCGGcuGGgCCGuccucgagacgGACGCg -3'
miRNA:   3'- uuaauUUCGCGCCuuCCaGGC-----------UUGCG- -5'
25044 5' -49.5 NC_005336.1 + 32981 0.66 0.995721
Target:  5'- --gUGGGGCccGCGGGAGGcucgugCCGGucCGCg -3'
miRNA:   3'- uuaAUUUCG--CGCCUUCCa-----GGCUu-GCG- -5'
25044 5' -49.5 NC_005336.1 + 34270 0.66 0.995721
Target:  5'- gAGUUGGAGa--GGAAGGagCCGAagACGCc -3'
miRNA:   3'- -UUAAUUUCgcgCCUUCCa-GGCU--UGCG- -5'
25044 5' -49.5 NC_005336.1 + 86278 0.66 0.995721
Target:  5'- ------cGCGCGGA--GUCCGGcuccACGCc -3'
miRNA:   3'- uuaauuuCGCGCCUucCAGGCU----UGCG- -5'
25044 5' -49.5 NC_005336.1 + 17929 0.66 0.995652
Target:  5'- ---aAGAGCGCGuccauggccaucuGguGGUCCGAGCa- -3'
miRNA:   3'- uuaaUUUCGCGC-------------CuuCCAGGCUUGcg -5'
25044 5' -49.5 NC_005336.1 + 50788 0.66 0.994988
Target:  5'- ------uGCGCGGc--GUCgGAGCGCa -3'
miRNA:   3'- uuaauuuCGCGCCuucCAGgCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 41290 0.66 0.994988
Target:  5'- ------cGCGCuGGuAGGUCCG-GCGUg -3'
miRNA:   3'- uuaauuuCGCG-CCuUCCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 123207 0.66 0.994988
Target:  5'- ------cGCGCuGGAcugcGGGUUCGcGCGCg -3'
miRNA:   3'- uuaauuuCGCG-CCU----UCCAGGCuUGCG- -5'
25044 5' -49.5 NC_005336.1 + 36487 0.67 0.994157
Target:  5'- --aUGucGCGCGcGGGGUagGAGCGCa -3'
miRNA:   3'- uuaAUuuCGCGCcUUCCAggCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 103203 0.67 0.994157
Target:  5'- ----cGAGCGCGGGccgcAGGUCgGGcucaucuCGCa -3'
miRNA:   3'- uuaauUUCGCGCCU----UCCAGgCUu------GCG- -5'
25044 5' -49.5 NC_005336.1 + 40480 0.67 0.994157
Target:  5'- ---gAAGGUGUGGAAGagccgcgcGUCCGcgUGCa -3'
miRNA:   3'- uuaaUUUCGCGCCUUC--------CAGGCuuGCG- -5'
25044 5' -49.5 NC_005336.1 + 136386 0.67 0.993978
Target:  5'- ------cGCGCGGcacauggcggcGGUCgCGGACGCg -3'
miRNA:   3'- uuaauuuCGCGCCuu---------CCAG-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 136386 0.67 0.993978
Target:  5'- ------cGCGCGGcacauggcggcGGUCgCGGACGCg -3'
miRNA:   3'- uuaauuuCGCGCCuu---------CCAG-GCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 74056 0.67 0.993218
Target:  5'- ---cGAGGCGCGc----UCCGGACGCg -3'
miRNA:   3'- uuaaUUUCGCGCcuuccAGGCUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 24831 0.67 0.993218
Target:  5'- ---gAGGGCGCGGGAGaccaugagcuUCCGGAacaGCg -3'
miRNA:   3'- uuaaUUUCGCGCCUUCc---------AGGCUUg--CG- -5'
25044 5' -49.5 NC_005336.1 + 80464 0.67 0.992163
Target:  5'- -----cGGCGCGGAuauGUCCacccgcgaGAGCGCu -3'
miRNA:   3'- uuaauuUCGCGCCUuc-CAGG--------CUUGCG- -5'
25044 5' -49.5 NC_005336.1 + 29990 0.67 0.992163
Target:  5'- ----cGAGCGCGG--GGUC-GAugGCg -3'
miRNA:   3'- uuaauUUCGCGCCuuCCAGgCUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.