miRNA display CGI


Results 1 - 20 of 668 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 3' -55.3 NC_005336.1 + 128843 1.13 0.001926
Target:  5'- gCCAACCUCGACGGCACGCACUACCGCu -3'
miRNA:   3'- -GGUUGGAGCUGCCGUGCGUGAUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 61851 0.88 0.091186
Target:  5'- cCCAGCC-CGGCGGCucGCGCACgACCGCg -3'
miRNA:   3'- -GGUUGGaGCUGCCG--UGCGUGaUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 10612 0.87 0.106754
Target:  5'- aCGACCgCGGCGGCGCGCGCgcccuCCGCg -3'
miRNA:   3'- gGUUGGaGCUGCCGUGCGUGau---GGCG- -5'
25045 3' -55.3 NC_005336.1 + 24853 0.85 0.13449
Target:  5'- gCCGAUCUCGAUGGCcuccgcguucgccGCGUugUACCGCg -3'
miRNA:   3'- -GGUUGGAGCUGCCG-------------UGCGugAUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 46403 0.83 0.192175
Target:  5'- aCGACCUCGAgcgcuuccacCGGCGCGCGgcGCCGCg -3'
miRNA:   3'- gGUUGGAGCU----------GCCGUGCGUgaUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 52112 0.82 0.197
Target:  5'- -aGGCUUCGACGGCGCGCAg-GCUGCg -3'
miRNA:   3'- ggUUGGAGCUGCCGUGCGUgaUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 45037 0.82 0.212114
Target:  5'- uUCGAgCUCGugGGCACGCcCUACgGCu -3'
miRNA:   3'- -GGUUgGAGCugCCGUGCGuGAUGgCG- -5'
25045 3' -55.3 NC_005336.1 + 125680 0.82 0.212114
Target:  5'- gCgGACCUUGAgGGCcugaugGCGUACUGCCGCa -3'
miRNA:   3'- -GgUUGGAGCUgCCG------UGCGUGAUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 64841 0.82 0.216839
Target:  5'- aCCGcCCUCGgggcaaggcgcgcGCGGCGCGCGCgugUGCCGCa -3'
miRNA:   3'- -GGUuGGAGC-------------UGCCGUGCGUG---AUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 113437 0.81 0.222735
Target:  5'- -gGACCUCGcggacuccGCGGCGCGCGCgcccggcgACCGCg -3'
miRNA:   3'- ggUUGGAGC--------UGCCGUGCGUGa-------UGGCG- -5'
25045 3' -55.3 NC_005336.1 + 77669 0.81 0.228768
Target:  5'- aCGAgCUCGACGGCGCGCGCauccccauugugauCCGCg -3'
miRNA:   3'- gGUUgGAGCUGCCGUGCGUGau------------GGCG- -5'
25045 3' -55.3 NC_005336.1 + 136590 0.81 0.233806
Target:  5'- cUCGGCCaCGGCGGC-CGCGCgGCCGCg -3'
miRNA:   3'- -GGUUGGaGCUGCCGuGCGUGaUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 136590 0.81 0.233806
Target:  5'- cUCGGCCaCGGCGGC-CGCGCgGCCGCg -3'
miRNA:   3'- -GGUUGGaGCUGCCGuGCGUGaUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 124408 0.81 0.241828
Target:  5'- aCCAACCUCGugGacgcggugucGCgucucguguguccguGCGCGCUGCCGCc -3'
miRNA:   3'- -GGUUGGAGCugC----------CG---------------UGCGUGAUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 135955 0.81 0.245336
Target:  5'- gCgGGCgCUCGGCGGCG-GCGCUGCUGCg -3'
miRNA:   3'- -GgUUG-GAGCUGCCGUgCGUGAUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 135955 0.81 0.245336
Target:  5'- gCgGGCgCUCGGCGGCG-GCGCUGCUGCg -3'
miRNA:   3'- -GgUUG-GAGCUGCCGUgCGUGAUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 14412 0.81 0.251276
Target:  5'- gCCGAUC-CG-CGGCACGCACUcGCCGUa -3'
miRNA:   3'- -GGUUGGaGCuGCCGUGCGUGA-UGGCG- -5'
25045 3' -55.3 NC_005336.1 + 29351 0.8 0.25979
Target:  5'- uCCAGCgUCGGCgagacgcuggccuugGGCACGCGC-GCCGCg -3'
miRNA:   3'- -GGUUGgAGCUG---------------CCGUGCGUGaUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 57638 0.8 0.276224
Target:  5'- aCGACUUCGACGccGCGCGCAaggcgUACCGCa -3'
miRNA:   3'- gGUUGGAGCUGC--CGUGCGUg----AUGGCG- -5'
25045 3' -55.3 NC_005336.1 + 27327 0.8 0.282763
Target:  5'- -aGACCUCuGGCGGCGCGaGCUugCGCu -3'
miRNA:   3'- ggUUGGAG-CUGCCGUGCgUGAugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.