miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25045 5' -55.1 NC_005336.1 + 16228 0.67 0.906919
Target:  5'- gCGUGAGCccGUGuuCGUCGAGcgccucGGGGUc -3'
miRNA:   3'- aGCACUCG--CACuuGCGGCUCu-----UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 114784 0.67 0.906301
Target:  5'- aCGUGGGCGUGGagauccuGCGCuCGcuGGAGGa- -3'
miRNA:   3'- aGCACUCGCACU-------UGCG-GCu-CUUCCcg -5'
25045 5' -55.1 NC_005336.1 + 107452 0.67 0.905057
Target:  5'- gCGUGAcggaggcgcgcgcgGCGcUGAGCuGCCGAGAGaucGGCu -3'
miRNA:   3'- aGCACU--------------CGC-ACUUG-CGGCUCUUc--CCG- -5'
25045 5' -55.1 NC_005336.1 + 79518 0.67 0.903174
Target:  5'- gUCGcUGAGCuUGAGCGugcugaaggucuuguCCGcgucGAAGGGCg -3'
miRNA:   3'- -AGC-ACUCGcACUUGC---------------GGCu---CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 88429 0.67 0.90063
Target:  5'- aCG-GcGCGgccucGGCGCCGGcGGAGGGCa -3'
miRNA:   3'- aGCaCuCGCac---UUGCGGCU-CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 123533 0.67 0.894108
Target:  5'- gCGUggugGAGCGcGAGCGCa-AGAcGGGCa -3'
miRNA:   3'- aGCA----CUCGCaCUUGCGgcUCUuCCCG- -5'
25045 5' -55.1 NC_005336.1 + 91871 0.67 0.894108
Target:  5'- ---cGAGCGUG---GCCGGcGAGGGGUa -3'
miRNA:   3'- agcaCUCGCACuugCGGCU-CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 113388 0.67 0.894108
Target:  5'- gCGUGugccGCGUGcugcacaaacGCGUCGAcGAGGGCg -3'
miRNA:   3'- aGCACu---CGCACu---------UGCGGCUcUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 22752 0.67 0.894108
Target:  5'- -aGUGGGUGcuucgcuguuUGAugGCUGAGuAGGuGCa -3'
miRNA:   3'- agCACUCGC----------ACUugCGGCUCuUCC-CG- -5'
25045 5' -55.1 NC_005336.1 + 103701 0.67 0.891434
Target:  5'- -gGUGGGCGUGAugGCCGuGugucccuucgaccAGGacGCg -3'
miRNA:   3'- agCACUCGCACUugCGGCuCu------------UCC--CG- -5'
25045 5' -55.1 NC_005336.1 + 11415 0.67 0.887354
Target:  5'- cCGUGGGCGUGAcgacgGCGCagcagagccgCGuGAAcGGCa -3'
miRNA:   3'- aGCACUCGCACU-----UGCG----------GCuCUUcCCG- -5'
25045 5' -55.1 NC_005336.1 + 64104 0.67 0.885976
Target:  5'- uUCGUGGGCaagGAccgagucGCGCaCGAguuugccgugcgcGAGGGGCa -3'
miRNA:   3'- -AGCACUCGca-CU-------UGCG-GCU-------------CUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 30074 0.67 0.880374
Target:  5'- aCGUGAGCGcGAACaCCGcGGAGacucGGCc -3'
miRNA:   3'- aGCACUCGCaCUUGcGGCuCUUC----CCG- -5'
25045 5' -55.1 NC_005336.1 + 62704 0.67 0.880374
Target:  5'- gUCGcGAgGCGgcucGACGCCGuGGAGcGGCg -3'
miRNA:   3'- -AGCaCU-CGCac--UUGCGGCuCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 47016 0.68 0.865752
Target:  5'- gCGacGGCGUGGuCGCgGAGAAGGagGCg -3'
miRNA:   3'- aGCacUCGCACUuGCGgCUCUUCC--CG- -5'
25045 5' -55.1 NC_005336.1 + 40441 0.68 0.865752
Target:  5'- gCGUGcGCGcGAcgcgcACGCCG-GAGGcGGCg -3'
miRNA:   3'- aGCACuCGCaCU-----UGCGGCuCUUC-CCG- -5'
25045 5' -55.1 NC_005336.1 + 10114 0.68 0.865752
Target:  5'- gCGUGAacGUGUGGcuGCGCCcAGGAGucGGCg -3'
miRNA:   3'- aGCACU--CGCACU--UGCGGcUCUUC--CCG- -5'
25045 5' -55.1 NC_005336.1 + 72311 0.68 0.864998
Target:  5'- gCGUGcGCGUGAucCG-CGAGGugcucaaGGGGCg -3'
miRNA:   3'- aGCACuCGCACUu-GCgGCUCU-------UCCCG- -5'
25045 5' -55.1 NC_005336.1 + 95217 0.68 0.850282
Target:  5'- aCGccAGcCGcGAGCGCCGccaccaGGAAGGGCg -3'
miRNA:   3'- aGCacUC-GCaCUUGCGGC------UCUUCCCG- -5'
25045 5' -55.1 NC_005336.1 + 115642 0.68 0.850282
Target:  5'- cUCGUGGGCcagacGAACcUCGAGGAGGuGCc -3'
miRNA:   3'- -AGCACUCGca---CUUGcGGCUCUUCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.