miRNA display CGI


Results 1 - 20 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25046 3' -51.7 NC_005336.1 + 53067 0.66 0.987306
Target:  5'- cACCGUGUcCGAGAuagugagcuacguaaACGCUAgcgGGAACGuGCu -3'
miRNA:   3'- -UGGCGUA-GCUCU---------------UGCGGU---UCUUGU-CG- -5'
25046 3' -51.7 NC_005336.1 + 7620 0.66 0.986654
Target:  5'- -gCGCAgauuuauGAGCGCCucgcGGAGCGGCc -3'
miRNA:   3'- ugGCGUagcu---CUUGCGGu---UCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 26983 0.66 0.986654
Target:  5'- uGCCGCcuccUCGAGGuccGCGUCgGAGAGCAu- -3'
miRNA:   3'- -UGGCGu---AGCUCU---UGCGG-UUCUUGUcg -5'
25046 3' -51.7 NC_005336.1 + 22358 0.66 0.986654
Target:  5'- uCCGCAcagCGcGAAcacCGCCAGGAACAc- -3'
miRNA:   3'- uGGCGUa--GCuCUU---GCGGUUCUUGUcg -5'
25046 3' -51.7 NC_005336.1 + 118437 0.66 0.986654
Target:  5'- -gCGCGUCGAaGGCuGCCuuGAGcACGGCg -3'
miRNA:   3'- ugGCGUAGCUcUUG-CGG--UUCuUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 48476 0.66 0.986654
Target:  5'- cGCCGuCAU---GAAgGCCGuGAGCAGCa -3'
miRNA:   3'- -UGGC-GUAgcuCUUgCGGUuCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 30342 0.66 0.986654
Target:  5'- cACCGaCAUCGgcAGGuCGCCGuGGAgcccgcacgGCAGCa -3'
miRNA:   3'- -UGGC-GUAGC--UCUuGCGGU-UCU---------UGUCG- -5'
25046 3' -51.7 NC_005336.1 + 124740 0.66 0.986654
Target:  5'- aGCCGCAacauggcgUCGGcGAGgGCCGcGAGguGCc -3'
miRNA:   3'- -UGGCGU--------AGCU-CUUgCGGUuCUUguCG- -5'
25046 3' -51.7 NC_005336.1 + 29673 0.66 0.986654
Target:  5'- uCCGCGcUCGAGGccAUGCCcuc-GCGGCa -3'
miRNA:   3'- uGGCGU-AGCUCU--UGCGGuucuUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 92144 0.66 0.986654
Target:  5'- uCCGCGUCcucgaggaaGAGAGCGuCCAGcGGguGCa -3'
miRNA:   3'- uGGCGUAG---------CUCUUGC-GGUUcUUguCG- -5'
25046 3' -51.7 NC_005336.1 + 100255 0.66 0.986654
Target:  5'- gGCUGCA-CGAGcAgGUCGucGGGCAGCg -3'
miRNA:   3'- -UGGCGUaGCUCuUgCGGUu-CUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 38357 0.66 0.986654
Target:  5'- uCCGCGUcCGGGAGCGCgAccacgcgcGCGGCc -3'
miRNA:   3'- uGGCGUA-GCUCUUGCGgUucu-----UGUCG- -5'
25046 3' -51.7 NC_005336.1 + 47058 0.66 0.986654
Target:  5'- cGCCGUccccguggAUCGGGAuaGCCGAGAcGCGcGCg -3'
miRNA:   3'- -UGGCG--------UAGCUCUugCGGUUCU-UGU-CG- -5'
25046 3' -51.7 NC_005336.1 + 106042 0.66 0.986654
Target:  5'- cGCCGC-UCGAGA-CGCgCAuccuCGGCu -3'
miRNA:   3'- -UGGCGuAGCUCUuGCG-GUucuuGUCG- -5'
25046 3' -51.7 NC_005336.1 + 41914 0.66 0.986654
Target:  5'- cUCGCGcCGAGGcgcuCGCgGAGcGCGGCg -3'
miRNA:   3'- uGGCGUaGCUCUu---GCGgUUCuUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 10368 0.66 0.986654
Target:  5'- aGCCGCAgcaggucucCGGGAgguccacgcgcGCGCCGGcguccAGCAGCg -3'
miRNA:   3'- -UGGCGUa--------GCUCU-----------UGCGGUUc----UUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 111357 0.66 0.986654
Target:  5'- cGCCGCA-CGAGcgUGC--GGAAgAGCg -3'
miRNA:   3'- -UGGCGUaGCUCuuGCGguUCUUgUCG- -5'
25046 3' -51.7 NC_005336.1 + 38720 0.66 0.986149
Target:  5'- cGCCGCccCGAGAAguaggucugccgccCGCCGuGGAUGGUg -3'
miRNA:   3'- -UGGCGuaGCUCUU--------------GCGGUuCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 130582 0.66 0.985629
Target:  5'- uGCaCGCAUCGcGGccauGCGCCAucgcucgcgacugguGGAGCGcGCg -3'
miRNA:   3'- -UG-GCGUAGCuCU----UGCGGU---------------UCUUGU-CG- -5'
25046 3' -51.7 NC_005336.1 + 125530 0.66 0.985629
Target:  5'- aGCCGCAccauggCGAGGugcaucgucgaucgcGCGCaCGAGcccGGCGGCu -3'
miRNA:   3'- -UGGCGUa-----GCUCU---------------UGCG-GUUC---UUGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.