miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25046 3' -51.7 NC_005336.1 + 128514 1.13 0.003806
Target:  5'- cACCGCAUCGAGAACGCCAAGAACAGCa -3'
miRNA:   3'- -UGGCGUAGCUCUUGCGGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 64442 0.83 0.27577
Target:  5'- cACCGCGgugcUCGAGcuCGUCAGGGACGGCg -3'
miRNA:   3'- -UGGCGU----AGCUCuuGCGGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 91072 0.82 0.311096
Target:  5'- uGCCgGCcgCGAGcGCGuCCGAGAGCAGCg -3'
miRNA:   3'- -UGG-CGuaGCUCuUGC-GGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 133148 0.82 0.311096
Target:  5'- cGCUGguUCGAG-GCGCgCAAGGACAGCg -3'
miRNA:   3'- -UGGCguAGCUCuUGCG-GUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 94797 0.82 0.32463
Target:  5'- gGCCGCGagguucagagagCGAGGGCGCCGGGAACuGCc -3'
miRNA:   3'- -UGGCGUa-----------GCUCUUGCGGUUCUUGuCG- -5'
25046 3' -51.7 NC_005336.1 + 70737 0.8 0.38307
Target:  5'- gACaCGCc-CGAGAACGCCGAGAACcGCg -3'
miRNA:   3'- -UG-GCGuaGCUCUUGCGGUUCUUGuCG- -5'
25046 3' -51.7 NC_005336.1 + 89451 0.8 0.4094
Target:  5'- gACCGCuUCGAGGACGCUagcgacGAGGcCAGCa -3'
miRNA:   3'- -UGGCGuAGCUCUUGCGG------UUCUuGUCG- -5'
25046 3' -51.7 NC_005336.1 + 41352 0.8 0.418424
Target:  5'- cGCCGCGUCaccacGGugGUCGAGGACGGCg -3'
miRNA:   3'- -UGGCGUAGcu---CUugCGGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 118944 0.79 0.45569
Target:  5'- uCgGCAUCGAGuacucgaagGACGCCAAGAAcCGGCu -3'
miRNA:   3'- uGgCGUAGCUC---------UUGCGGUUCUU-GUCG- -5'
25046 3' -51.7 NC_005336.1 + 64898 0.79 0.45569
Target:  5'- cUCGCGcuuggCGAGGcuguugcgcgACGCCGAGAGCAGCg -3'
miRNA:   3'- uGGCGUa----GCUCU----------UGCGGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 74145 0.78 0.48478
Target:  5'- gACgGCGUCGGuGGGCGCCAuGAAgAGCg -3'
miRNA:   3'- -UGgCGUAGCU-CUUGCGGUuCUUgUCG- -5'
25046 3' -51.7 NC_005336.1 + 9658 0.78 0.504658
Target:  5'- cGCUGCGUcCGAGAGCGCCu-GcGCGGCc -3'
miRNA:   3'- -UGGCGUA-GCUCUUGCGGuuCuUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 11854 0.78 0.504658
Target:  5'- -gCGCGUCc--GGCGCCAAGGGCAGCg -3'
miRNA:   3'- ugGCGUAGcucUUGCGGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 61910 0.77 0.535106
Target:  5'- cGCgCGCGUUGAGcAGCGCCGGGAAgAGg -3'
miRNA:   3'- -UG-GCGUAGCUC-UUGCGGUUCUUgUCg -5'
25046 3' -51.7 NC_005336.1 + 63994 0.77 0.544369
Target:  5'- uCCGCGUCGGcaagacgcgcuacGAGCG-CGAGAGCGGCa -3'
miRNA:   3'- uGGCGUAGCU-------------CUUGCgGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 46123 0.77 0.566174
Target:  5'- gAUCGUGUaCGGGGuCGUCAAGAACGGCa -3'
miRNA:   3'- -UGGCGUA-GCUCUuGCGGUUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 81826 0.76 0.576638
Target:  5'- gACCGCGUCGGGcgguugugcAGCGCCGcGuucAGCAGCg -3'
miRNA:   3'- -UGGCGUAGCUC---------UUGCGGUuC---UUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 99003 0.76 0.587145
Target:  5'- uACUuCGUCGAGAACGC--GGAGCGGCu -3'
miRNA:   3'- -UGGcGUAGCUCUUGCGguUCUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 29046 0.76 0.587145
Target:  5'- cGCCGaCAUCGucGACGCCGAGAccaAgGGCg -3'
miRNA:   3'- -UGGC-GUAGCucUUGCGGUUCU---UgUCG- -5'
25046 3' -51.7 NC_005336.1 + 73865 0.76 0.587145
Target:  5'- uACCGCGUCGGcGACaCCGuGAGCGGCa -3'
miRNA:   3'- -UGGCGUAGCUcUUGcGGUuCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.