miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25046 3' -51.7 NC_005336.1 + 109413 0.66 0.984913
Target:  5'- aGCCGCG-CGaAGGcCGCCuuGAGCGuGCg -3'
miRNA:   3'- -UGGCGUaGC-UCUuGCGGuuCUUGU-CG- -5'
25046 3' -51.7 NC_005336.1 + 3369 0.66 0.984913
Target:  5'- cUCGCccugCGGGuACGCCGgcgAGAGCAGg -3'
miRNA:   3'- uGGCGua--GCUCuUGCGGU---UCUUGUCg -5'
25046 3' -51.7 NC_005336.1 + 45537 0.66 0.984913
Target:  5'- cACCGCgccGUCGAGcaccuCGCCGcGGGACuccuuGCg -3'
miRNA:   3'- -UGGCG---UAGCUCuu---GCGGU-UCUUGu----CG- -5'
25046 3' -51.7 NC_005336.1 + 65995 0.66 0.984913
Target:  5'- aACCGCGUUGuucacGAuGCGCCcc-AGCGGCa -3'
miRNA:   3'- -UGGCGUAGCu----CU-UGCGGuucUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 87911 0.66 0.984913
Target:  5'- uGCCGCGgaccaccacaGAGAGCaggaaguCCAGGAggGCGGCg -3'
miRNA:   3'- -UGGCGUag--------CUCUUGc------GGUUCU--UGUCG- -5'
25046 3' -51.7 NC_005336.1 + 116706 0.66 0.984913
Target:  5'- cGCCGC--CGGGGucCGCCA---GCAGCg -3'
miRNA:   3'- -UGGCGuaGCUCUu-GCGGUucuUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 100706 0.66 0.984913
Target:  5'- uGCCGCAcuuucccugcUCGGGGACgaagguGCCGAGcGCcuGCa -3'
miRNA:   3'- -UGGCGU----------AGCUCUUG------CGGUUCuUGu-CG- -5'
25046 3' -51.7 NC_005336.1 + 17475 0.66 0.984913
Target:  5'- aGCuCGCAggCGGGGuUGCCGcAGAcgACGGCg -3'
miRNA:   3'- -UG-GCGUa-GCUCUuGCGGU-UCU--UGUCG- -5'
25046 3' -51.7 NC_005336.1 + 11898 0.66 0.984913
Target:  5'- cCUGCGcCaGGGACGCCAccucugcGGGCAGCg -3'
miRNA:   3'- uGGCGUaGcUCUUGCGGUu------CUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 71156 0.66 0.984913
Target:  5'- gGCgGUGUCGc-AGCGCCGcgacGGGCAGCg -3'
miRNA:   3'- -UGgCGUAGCucUUGCGGUu---CUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 3369 0.66 0.984913
Target:  5'- cUCGCccugCGGGuACGCCGgcgAGAGCAGg -3'
miRNA:   3'- uGGCGua--GCUCuUGCGGU---UCUUGUCg -5'
25046 3' -51.7 NC_005336.1 + 104915 0.66 0.984913
Target:  5'- cGCCGCcgCGGcGGCGgcaUCAAGAuCGGCg -3'
miRNA:   3'- -UGGCGuaGCUcUUGC---GGUUCUuGUCG- -5'
25046 3' -51.7 NC_005336.1 + 91662 0.66 0.984913
Target:  5'- cUgGCG-CGGGAgGCGUCGGuGAGCAGCg -3'
miRNA:   3'- uGgCGUaGCUCU-UGCGGUU-CUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 65342 0.66 0.984913
Target:  5'- cGCUGCAg-GAGGgcugucugcuGCGCCAcuccaccGAGCGGCg -3'
miRNA:   3'- -UGGCGUagCUCU----------UGCGGUu------CUUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 29221 0.66 0.984913
Target:  5'- gGCCaGCAUCGugcgcgGGAACGUCGcguugaggcGGAaguccuGCAGCa -3'
miRNA:   3'- -UGG-CGUAGC------UCUUGCGGU---------UCU------UGUCG- -5'
25046 3' -51.7 NC_005336.1 + 27735 0.66 0.984913
Target:  5'- cACCGCGaccUCGA--GCGCugCAAGcGGCAGCu -3'
miRNA:   3'- -UGGCGU---AGCUcuUGCG--GUUC-UUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 44718 0.66 0.983004
Target:  5'- cCCGCGccaUCGAGGACGUguGuccGcGCGGCg -3'
miRNA:   3'- uGGCGU---AGCUCUUGCGguU---CuUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 55517 0.66 0.983004
Target:  5'- gAUCGCGaacUCGcAGAACGCgGAcuucGACGGCg -3'
miRNA:   3'- -UGGCGU---AGC-UCUUGCGgUUc---UUGUCG- -5'
25046 3' -51.7 NC_005336.1 + 129753 0.66 0.983004
Target:  5'- -gCGCAgaCGuGAACGCCGuGGAccucuGCGGCa -3'
miRNA:   3'- ugGCGUa-GCuCUUGCGGU-UCU-----UGUCG- -5'
25046 3' -51.7 NC_005336.1 + 78262 0.66 0.983004
Target:  5'- aGCUGCAgguccagCGcGGGCGUCGAGucgaaggugGGCAGCg -3'
miRNA:   3'- -UGGCGUa------GCuCUUGCGGUUC---------UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.