miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25047 3' -48.9 NC_005336.1 + 33401 0.66 0.997793
Target:  5'- uUGAG-CGCcACgAAUAUCUUCUGCUCc -3'
miRNA:   3'- uACUUgGCGaUG-UUGUGGAAGAUGAG- -5'
25047 3' -48.9 NC_005336.1 + 25991 0.66 0.997793
Target:  5'- gAUGAGCacguGCUugucguGCAUCUUCUGCUUg -3'
miRNA:   3'- -UACUUGg---CGAugu---UGUGGAAGAUGAG- -5'
25047 3' -48.9 NC_005336.1 + 21068 0.66 0.997358
Target:  5'- uUGGcaUGCUGCGGCACCggggUCUugUUc -3'
miRNA:   3'- uACUugGCGAUGUUGUGGa---AGAugAG- -5'
25047 3' -48.9 NC_005336.1 + 92813 0.66 0.997358
Target:  5'- -gGGugUGCaGCAcCAUCUUCUugUCg -3'
miRNA:   3'- uaCUugGCGaUGUuGUGGAAGAugAG- -5'
25047 3' -48.9 NC_005336.1 + 124260 0.66 0.997358
Target:  5'- -gGGGCUGCc-CGGCACCUcgCUGCUg -3'
miRNA:   3'- uaCUUGGCGauGUUGUGGAa-GAUGAg -5'
25047 3' -48.9 NC_005336.1 + 118036 0.66 0.997214
Target:  5'- uGUGAGCgCGCUGUGGCgcacgggccccgcgGCCUUCUGCa- -3'
miRNA:   3'- -UACUUG-GCGAUGUUG--------------UGGAAGAUGag -5'
25047 3' -48.9 NC_005336.1 + 86937 0.66 0.996272
Target:  5'- -cGAACgGCUGCAGCAUCUccUUGC-Cg -3'
miRNA:   3'- uaCUUGgCGAUGUUGUGGAa-GAUGaG- -5'
25047 3' -48.9 NC_005336.1 + 39417 0.66 0.996272
Target:  5'- cGUGGGCCGCgugGCGcccgGCACCUacgugcgcuUCUucgacacgcgGCUCg -3'
miRNA:   3'- -UACUUGGCGa--UGU----UGUGGA---------AGA----------UGAG- -5'
25047 3' -48.9 NC_005336.1 + 123403 0.66 0.996015
Target:  5'- cGUGGACgGCgGCGcGCGCCUggacguggucgagCUGCUCg -3'
miRNA:   3'- -UACUUGgCGaUGU-UGUGGAa------------GAUGAG- -5'
25047 3' -48.9 NC_005336.1 + 131685 0.66 0.995604
Target:  5'- -aGAACCuggaCUACGGCACCgugccUCUGCa- -3'
miRNA:   3'- uaCUUGGc---GAUGUUGUGGa----AGAUGag -5'
25047 3' -48.9 NC_005336.1 + 133119 0.66 0.995604
Target:  5'- cGUGAcGCCGCUgGCGGCGCUgcuggGCUCc -3'
miRNA:   3'- -UACU-UGGCGA-UGUUGUGGaaga-UGAG- -5'
25047 3' -48.9 NC_005336.1 + 100121 0.66 0.995604
Target:  5'- ---cGCCGC-GCAcguACACCUUCgcgUACUCg -3'
miRNA:   3'- uacuUGGCGaUGU---UGUGGAAG---AUGAG- -5'
25047 3' -48.9 NC_005336.1 + 123806 0.66 0.995604
Target:  5'- ---cGCCcCUGCAcagccucgcCACCUUCUGCUCg -3'
miRNA:   3'- uacuUGGcGAUGUu--------GUGGAAGAUGAG- -5'
25047 3' -48.9 NC_005336.1 + 107637 0.66 0.995532
Target:  5'- cUGAGCCccuccguGCUGCAGCACCgcgaggugCUggacgccguGCUCg -3'
miRNA:   3'- uACUUGG-------CGAUGUUGUGGaa------GA---------UGAG- -5'
25047 3' -48.9 NC_005336.1 + 81391 0.67 0.994843
Target:  5'- -cGAgcACCGCgUGCAGCGCCgcggcgggUCgaGCUCg -3'
miRNA:   3'- uaCU--UGGCG-AUGUUGUGGa-------AGa-UGAG- -5'
25047 3' -48.9 NC_005336.1 + 115320 0.67 0.994843
Target:  5'- cAUGGuGCUGCUGCugAGCcCCUUCUGCg- -3'
miRNA:   3'- -UACU-UGGCGAUG--UUGuGGAAGAUGag -5'
25047 3' -48.9 NC_005336.1 + 53676 0.67 0.994843
Target:  5'- cUGAGCCGCg---GCACCgggcUCUGCg- -3'
miRNA:   3'- uACUUGGCGauguUGUGGa---AGAUGag -5'
25047 3' -48.9 NC_005336.1 + 13440 0.67 0.994069
Target:  5'- -cGAagGCCGCcaGCGGCGCCacgucguaggcagugUCUGCUCg -3'
miRNA:   3'- uaCU--UGGCGa-UGUUGUGGa--------------AGAUGAG- -5'
25047 3' -48.9 NC_005336.1 + 134069 0.67 0.993977
Target:  5'- cUGAACCGCUGCcacgcgGACGCag-CUgacgcGCUCg -3'
miRNA:   3'- uACUUGGCGAUG------UUGUGgaaGA-----UGAG- -5'
25047 3' -48.9 NC_005336.1 + 61515 0.67 0.993977
Target:  5'- cGUGA--CGCUGCc-CACCUUCgACUCg -3'
miRNA:   3'- -UACUugGCGAUGuuGUGGAAGaUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.