miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25047 5' -57.3 NC_005336.1 + 95578 0.65 0.876792
Target:  5'- cGGAgucGCCGAAGGcgaaggaggcggGCCGcgcCACGCGc -3'
miRNA:   3'- aCCU---CGGCUUCCa-----------CGGCaa-GUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 92194 0.66 0.87105
Target:  5'- gUGGGGUCGcAGGUGUgca--GCGCGGc -3'
miRNA:   3'- -ACCUCGGCuUCCACGgcaagUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 7353 0.66 0.87105
Target:  5'- cGGcAGCCGcgggcgugcGAGGUcgcccGCCGgcgCGCGCGa -3'
miRNA:   3'- aCC-UCGGC---------UUCCA-----CGGCaa-GUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 53527 0.66 0.87105
Target:  5'- gUGGAGCCGGAcu--CCGcgCGCGCGc -3'
miRNA:   3'- -ACCUCGGCUUccacGGCaaGUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 8671 0.66 0.87105
Target:  5'- cGGAGUCGcc---GCCGUcggccccgUCGCGCGGc -3'
miRNA:   3'- aCCUCGGCuuccaCGGCA--------AGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 27666 0.66 0.87105
Target:  5'- aUGGAGCCucgcuucuGGG-GCCGcgcCAUGUGGg -3'
miRNA:   3'- -ACCUCGGcu------UCCaCGGCaa-GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 135926 0.66 0.863685
Target:  5'- cGGGGCCGcggccucGGcGCgCGacgCGCGCGGg -3'
miRNA:   3'- aCCUCGGCuu-----CCaCG-GCaa-GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 45338 0.66 0.863685
Target:  5'- cGGGGUCGAcGGGcGUCGgaguCGCGGa -3'
miRNA:   3'- aCCUCGGCU-UCCaCGGCaaguGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 75914 0.66 0.863685
Target:  5'- cGaAGgCGAAGGUggccgcgaugcGCCGguaCACGCGGa -3'
miRNA:   3'- aCcUCgGCUUCCA-----------CGGCaa-GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 125528 0.66 0.863685
Target:  5'- -aGAGCCGcaccauggcGAGGUGCauCGUcgaUCGCGCGc -3'
miRNA:   3'- acCUCGGC---------UUCCACG--GCA---AGUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 135926 0.66 0.863685
Target:  5'- cGGGGCCGcggccucGGcGCgCGacgCGCGCGGg -3'
miRNA:   3'- aCCUCGGCuu-----CCaCG-GCaa-GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 119121 0.66 0.862937
Target:  5'- gGGuGCCuuacgacaucgaGGAGGUGCCGgacCACgacuauaGCGGg -3'
miRNA:   3'- aCCuCGG------------CUUCCACGGCaa-GUG-------CGCC- -5'
25047 5' -57.3 NC_005336.1 + 90441 0.66 0.856116
Target:  5'- cGGcGCCGGAGcUGgucaCGcgCGCGCGGg -3'
miRNA:   3'- aCCuCGGCUUCcACg---GCaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 3485 0.66 0.856116
Target:  5'- cGGGGCCcgccuccgcGAAGGcgGCCGgcaGCgGCGGc -3'
miRNA:   3'- aCCUCGG---------CUUCCa-CGGCaagUG-CGCC- -5'
25047 5' -57.3 NC_005336.1 + 136630 0.66 0.856116
Target:  5'- cGGcAGCUGGAGcG-GCUGcgcCGCGCGGa -3'
miRNA:   3'- aCC-UCGGCUUC-CaCGGCaa-GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 127299 0.66 0.856116
Target:  5'- aUGGgcGGCgCGGAGGcgGCCGUgaucgcacugCugGUGGa -3'
miRNA:   3'- -ACC--UCG-GCUUCCa-CGGCAa---------GugCGCC- -5'
25047 5' -57.3 NC_005336.1 + 3485 0.66 0.856116
Target:  5'- cGGGGCCcgccuccgcGAAGGcgGCCGgcaGCgGCGGc -3'
miRNA:   3'- aCCUCGG---------CUUCCa-CGGCaagUG-CGCC- -5'
25047 5' -57.3 NC_005336.1 + 59810 0.66 0.856116
Target:  5'- cGGGGUCGccGGUGCCaGggacgUugGUGGc -3'
miRNA:   3'- aCCUCGGCuuCCACGG-Caa---GugCGCC- -5'
25047 5' -57.3 NC_005336.1 + 136630 0.66 0.856116
Target:  5'- cGGcAGCUGGAGcG-GCUGcgcCGCGCGGa -3'
miRNA:   3'- aCC-UCGGCUUC-CaCGGCaa-GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 124759 0.66 0.848348
Target:  5'- cGaGGGCCGcGAGGUGCC-----CGCGGa -3'
miRNA:   3'- aC-CUCGGC-UUCCACGGcaaguGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.