miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25047 5' -57.3 NC_005336.1 + 128355 1.09 0.002061
Target:  5'- gUGGAGCCGAAGGUGCCGUUCACGCGGc -3'
miRNA:   3'- -ACCUCGGCUUCCACGGCAAGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 84032 0.79 0.223912
Target:  5'- aGGAGCCGGAcacgcaggagccGGaGCCGgaCACGCGGg -3'
miRNA:   3'- aCCUCGGCUU------------CCaCGGCaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 3455 0.76 0.347788
Target:  5'- aGGucaCCGAGGcGgaGCCGUUCGCGCGGa -3'
miRNA:   3'- aCCuc-GGCUUC-Ca-CGGCAAGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 8943 0.76 0.347788
Target:  5'- cGGAGCaCGAAGGccGCCGUg-GCGUGGc -3'
miRNA:   3'- aCCUCG-GCUUCCa-CGGCAagUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 3455 0.76 0.347788
Target:  5'- aGGucaCCGAGGcGgaGCCGUUCGCGCGGa -3'
miRNA:   3'- aCCuc-GGCUUC-Ca-CGGCAAGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 87924 0.74 0.404339
Target:  5'- aGGAGCCGAacuccggcgcggAGGUGuCCGccgCGCGCGc -3'
miRNA:   3'- aCCUCGGCU------------UCCAC-GGCaa-GUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 5812 0.73 0.448122
Target:  5'- aGGcGGCCGAGgccGGcGCCGcgCGCGCGGc -3'
miRNA:   3'- aCC-UCGGCUU---CCaCGGCaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 122398 0.73 0.494408
Target:  5'- cGGAGaCG-AGGUGCUGUUCAccCGCGa -3'
miRNA:   3'- aCCUCgGCuUCCACGGCAAGU--GCGCc -5'
25047 5' -57.3 NC_005336.1 + 92707 0.73 0.494408
Target:  5'- gGGAGCCGGuucAGacGUCGUUCGCGCGc -3'
miRNA:   3'- aCCUCGGCU---UCcaCGGCAAGUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 19010 0.72 0.532945
Target:  5'- aUGGGcCCGAAGGcGCCGgugUCggagACGCGGu -3'
miRNA:   3'- -ACCUcGGCUUCCaCGGCa--AG----UGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 80971 0.72 0.552617
Target:  5'- cGG-GCCGGAucuGGUGCCGguccaucaUCGCGCGc -3'
miRNA:   3'- aCCuCGGCUU---CCACGGCa-------AGUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 30372 0.72 0.552617
Target:  5'- aGGAGCUGcugcgcacgcucAAGGcgGCC-UUCGCGCGGc -3'
miRNA:   3'- aCCUCGGC------------UUCCa-CGGcAAGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 66525 0.71 0.562536
Target:  5'- -cGAGCUGcGGGUG-CGggCGCGCGGa -3'
miRNA:   3'- acCUCGGCuUCCACgGCaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 56850 0.71 0.562536
Target:  5'- cGGAGgCGGAGGcGCUcucCGCGCGGg -3'
miRNA:   3'- aCCUCgGCUUCCaCGGcaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 66115 0.71 0.572503
Target:  5'- cGGAGCCaGAGGGcGUgGUgcucuucuacgCGCGCGGa -3'
miRNA:   3'- aCCUCGG-CUUCCaCGgCAa----------GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 10988 0.71 0.572503
Target:  5'- aGGuGCgCGAAGGUGUCGUcCACGauGa -3'
miRNA:   3'- aCCuCG-GCUUCCACGGCAaGUGCgcC- -5'
25047 5' -57.3 NC_005336.1 + 70949 0.71 0.572503
Target:  5'- aGG-GCaCGccGGUGCCGc-CGCGCGGg -3'
miRNA:   3'- aCCuCG-GCuuCCACGGCaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 100724 0.71 0.58251
Target:  5'- cGGGGaCGAAGGUGCCGa--GCGCc- -3'
miRNA:   3'- aCCUCgGCUUCCACGGCaagUGCGcc -5'
25047 5' -57.3 NC_005336.1 + 51680 0.71 0.592552
Target:  5'- cGaGGGCCG--GGUGCCGgcgcUCGCGCuGGa -3'
miRNA:   3'- aC-CUCGGCuuCCACGGCa---AGUGCG-CC- -5'
25047 5' -57.3 NC_005336.1 + 21466 0.71 0.598592
Target:  5'- cGGAgcugcugGCCGAcgcgcgcuucauggAGGUgGCCGcgCGCGCGGc -3'
miRNA:   3'- aCCU-------CGGCU--------------UCCA-CGGCaaGUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.