miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25047 5' -57.3 NC_005336.1 + 54615 0.66 0.848348
Target:  5'- gGGAGCgCGAGGGcucGCUGguggacaUCGCGCa- -3'
miRNA:   3'- aCCUCG-GCUUCCa--CGGCa------AGUGCGcc -5'
25047 5' -57.3 NC_005336.1 + 124759 0.66 0.848348
Target:  5'- cGaGGGCCGcGAGGUGCC-----CGCGGa -3'
miRNA:   3'- aC-CUCGGC-UUCCACGGcaaguGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 19272 0.66 0.847561
Target:  5'- cGGcGUCGuuGGUGCCGUcgaugccUCAgugguUGCGGa -3'
miRNA:   3'- aCCuCGGCuuCCACGGCA-------AGU-----GCGCC- -5'
25047 5' -57.3 NC_005336.1 + 114389 0.66 0.841194
Target:  5'- cGGAGCUGGAgaucgacgcggcGGUgGCCGgcgagcgcacggagCGCGUGGg -3'
miRNA:   3'- aCCUCGGCUU------------CCA-CGGCaa------------GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 44251 0.66 0.84039
Target:  5'- cUGGcGCUGGAGGcG-CGcgCGCGCGGc -3'
miRNA:   3'- -ACCuCGGCUUCCaCgGCaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 83938 0.66 0.84039
Target:  5'- cGGGGCgCGccGGUGCgGggCACacugcuggugGCGGg -3'
miRNA:   3'- aCCUCG-GCuuCCACGgCaaGUG----------CGCC- -5'
25047 5' -57.3 NC_005336.1 + 103409 0.66 0.84039
Target:  5'- aGGAGUgGGAG--GCCGUgCGCGCGc -3'
miRNA:   3'- aCCUCGgCUUCcaCGGCAaGUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 126363 0.66 0.84039
Target:  5'- gUGGcGCCGcuGGcgGCCuucGggCGCGCGGa -3'
miRNA:   3'- -ACCuCGGCuuCCa-CGG---CaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 125995 0.67 0.835525
Target:  5'- aGGAGCUGgcGGccuucgcgcgcgugGCC-UUCGCGCGa -3'
miRNA:   3'- aCCUCGGCuuCCa-------------CGGcAAGUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 75082 0.67 0.832246
Target:  5'- cGcGAGCCGc----GCCGcgCGCGCGGg -3'
miRNA:   3'- aC-CUCGGCuuccaCGGCaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 77992 0.67 0.832246
Target:  5'- uUGGAGCgGAuGGcGCCGcgCuccuUGCGGu -3'
miRNA:   3'- -ACCUCGgCUuCCaCGGCaaGu---GCGCC- -5'
25047 5' -57.3 NC_005336.1 + 60194 0.67 0.832246
Target:  5'- nGGGGCCGGcgacGGG-GCUGgggCugGCGc -3'
miRNA:   3'- aCCUCGGCU----UCCaCGGCaa-GugCGCc -5'
25047 5' -57.3 NC_005336.1 + 90261 0.67 0.832246
Target:  5'- cGGGGCCGccGcUGCaccggCGCGCGGa -3'
miRNA:   3'- aCCUCGGCuuCcACGgcaa-GUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 75557 0.67 0.823925
Target:  5'- cGGAuGCCGAagcgccgcaugaAGGUGUa---CACGCGGc -3'
miRNA:   3'- aCCU-CGGCU------------UCCACGgcaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 47037 0.67 0.823925
Target:  5'- aGGAGgCGguGGUGCgGcgCGCGCc- -3'
miRNA:   3'- aCCUCgGCuuCCACGgCaaGUGCGcc -5'
25047 5' -57.3 NC_005336.1 + 77817 0.67 0.815433
Target:  5'- cGGuGCCGAagAGGcUGCaGUaCACGCGa -3'
miRNA:   3'- aCCuCGGCU--UCC-ACGgCAaGUGCGCc -5'
25047 5' -57.3 NC_005336.1 + 32380 0.67 0.815433
Target:  5'- cUGGAagaacuGCCGcAGGUGCuCGUcCGUGCGGc -3'
miRNA:   3'- -ACCU------CGGCuUCCACG-GCAaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 11801 0.67 0.815433
Target:  5'- cGuGGCCGcgcucGGcGUGCgcgCGUUCACGCGGu -3'
miRNA:   3'- aCcUCGGCu----UC-CACG---GCAAGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 93389 0.67 0.815433
Target:  5'- aUGGAGUCGuccaaacAGGcGCCc--CGCGCGGg -3'
miRNA:   3'- -ACCUCGGCu------UCCaCGGcaaGUGCGCC- -5'
25047 5' -57.3 NC_005336.1 + 83509 0.67 0.806779
Target:  5'- gGGAGUUuuuauGAGGUGCCGguauugucCACGCGa -3'
miRNA:   3'- aCCUCGGc----UUCCACGGCaa------GUGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.