miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25048 3' -56.7 NC_005336.1 + 64094 0.66 0.873172
Target:  5'- cCGCGUcGCCuUCGUGGGCaaGgacCGAGUCg -3'
miRNA:   3'- cGUGCA-CGG-AGUACUCGcgC---GCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 54679 0.66 0.873172
Target:  5'- cCGCGgcUGCCccaUCGUG-GUGCGCGAGc- -3'
miRNA:   3'- cGUGC--ACGG---AGUACuCGCGCGCUCag -5'
25048 3' -56.7 NC_005336.1 + 20101 0.66 0.873172
Target:  5'- -gGCcUGgCUCAUGAGCGgGuCGuAGUCg -3'
miRNA:   3'- cgUGcACgGAGUACUCGCgC-GC-UCAG- -5'
25048 3' -56.7 NC_005336.1 + 109037 0.66 0.870229
Target:  5'- cGCGCacGCCUCcacgcucgcgaAGCGCGCGGGUg -3'
miRNA:   3'- -CGUGcaCGGAGuac--------UCGCGCGCUCAg -5'
25048 3' -56.7 NC_005336.1 + 53282 0.66 0.865752
Target:  5'- cGCACaagGCCgcgcgacgCGUG-GUGCGCGAGg- -3'
miRNA:   3'- -CGUGca-CGGa-------GUACuCGCGCGCUCag -5'
25048 3' -56.7 NC_005336.1 + 30403 0.66 0.865752
Target:  5'- cGCGCGgcugcgcGCCgcg-GAGCuGCGCGAGcUCc -3'
miRNA:   3'- -CGUGCa------CGGaguaCUCG-CGCGCUC-AG- -5'
25048 3' -56.7 NC_005336.1 + 11922 0.66 0.865752
Target:  5'- aGCgGCGuUGUCUCGUccaggucugaGAGCGCG-GGGUCc -3'
miRNA:   3'- -CG-UGC-ACGGAGUA----------CUCGCGCgCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 49474 0.66 0.864998
Target:  5'- aGCACG-GUcgacgagCUCAUGGGCGUGgaCGGGUUc -3'
miRNA:   3'- -CGUGCaCG-------GAGUACUCGCGC--GCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 103614 0.66 0.85812
Target:  5'- gGCGaugGUGCC-CGgcgaGGCGCGCGAGg- -3'
miRNA:   3'- -CGUg--CACGGaGUac--UCGCGCGCUCag -5'
25048 3' -56.7 NC_005336.1 + 56987 0.66 0.85812
Target:  5'- cGCGCGUGCgcaUCAc--GCGCGCGAc-- -3'
miRNA:   3'- -CGUGCACGg--AGUacuCGCGCGCUcag -5'
25048 3' -56.7 NC_005336.1 + 109554 0.66 0.857345
Target:  5'- aGCACGcccgagGCCgugCAguacacgGAGCGCggcucgcGCGGGUCc -3'
miRNA:   3'- -CGUGCa-----CGGa--GUa------CUCGCG-------CGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 128054 0.66 0.857345
Target:  5'- gGCGCGcuagacuUGCUgagugCGgaGAGCGCGCGAG-Cg -3'
miRNA:   3'- -CGUGC-------ACGGa----GUa-CUCGCGCGCUCaG- -5'
25048 3' -56.7 NC_005336.1 + 17205 0.66 0.857345
Target:  5'- gGCGCG-GCCUCcucGGGCGgCGgcagcaccgcguaCGAGUCg -3'
miRNA:   3'- -CGUGCaCGGAGua-CUCGC-GC-------------GCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 21481 0.66 0.85579
Target:  5'- aCGCGcGCUUCAUGGagguggccgcGCGCGCGgccgagcucgcggaGGUCa -3'
miRNA:   3'- cGUGCaCGGAGUACU----------CGCGCGC--------------UCAG- -5'
25048 3' -56.7 NC_005336.1 + 42230 0.66 0.85579
Target:  5'- cGCACcgcgGCCgcCGUgGAGCGCGCGcagccgcugcccgaAGUCg -3'
miRNA:   3'- -CGUGca--CGGa-GUA-CUCGCGCGC--------------UCAG- -5'
25048 3' -56.7 NC_005336.1 + 62755 0.66 0.855009
Target:  5'- aGCAUGUGCCgcaccuacacaaccUgCAUGAGCGCggaucgcgcggccGCG-GUCu -3'
miRNA:   3'- -CGUGCACGG--------------A-GUACUCGCG-------------CGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 118316 0.66 0.850282
Target:  5'- cGCGCG-GCCaccucCAUGaAGCGCGCGucGGcCa -3'
miRNA:   3'- -CGUGCaCGGa----GUAC-UCGCGCGC--UCaG- -5'
25048 3' -56.7 NC_005336.1 + 82025 0.66 0.850282
Target:  5'- aGCACGccGUUcgugaUCAcGGGCGCGCG-GUCg -3'
miRNA:   3'- -CGUGCa-CGG-----AGUaCUCGCGCGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 91692 0.66 0.849488
Target:  5'- cGCACGUugaGCagCAUGAGCaggucccGCGCGAG-Ca -3'
miRNA:   3'- -CGUGCA---CGgaGUACUCG-------CGCGCUCaG- -5'
25048 3' -56.7 NC_005336.1 + 50589 0.66 0.842246
Target:  5'- cGCGCGcGCCauggUCGUGAGCa-GCGAG-Cg -3'
miRNA:   3'- -CGUGCaCGG----AGUACUCGcgCGCUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.