miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25048 3' -56.7 NC_005336.1 + 125710 1.12 0.001298
Target:  5'- cGCACGUGCCUCAUGAGCGCGCGAGUCg -3'
miRNA:   3'- -CGUGCACGGAGUACUCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 15360 0.79 0.235837
Target:  5'- cCACGUGCCggacgUCGUgcGAGCGCGCGAGaUCc -3'
miRNA:   3'- cGUGCACGG-----AGUA--CUCGCGCGCUC-AG- -5'
25048 3' -56.7 NC_005336.1 + 80131 0.77 0.285587
Target:  5'- gGCGCGcGUCUCGuugaUGAGCGCGCGcacgcGGUCg -3'
miRNA:   3'- -CGUGCaCGGAGU----ACUCGCGCGC-----UCAG- -5'
25048 3' -56.7 NC_005336.1 + 65234 0.76 0.351029
Target:  5'- cGCGCGUGCC-CAUGu-CGCGCGucGUCg -3'
miRNA:   3'- -CGUGCACGGaGUACucGCGCGCu-CAG- -5'
25048 3' -56.7 NC_005336.1 + 111789 0.74 0.417589
Target:  5'- uGCACGUGCa-CGUGaAGcCGCGCGAGg- -3'
miRNA:   3'- -CGUGCACGgaGUAC-UC-GCGCGCUCag -5'
25048 3' -56.7 NC_005336.1 + 12585 0.74 0.435393
Target:  5'- cGCGCGcGCCguggcgCAUGAGCGCacacaGCGuGUCu -3'
miRNA:   3'- -CGUGCaCGGa-----GUACUCGCG-----CGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 130828 0.74 0.444457
Target:  5'- cCACG-GCCUCAUcGAGCGCGUGGa-- -3'
miRNA:   3'- cGUGCaCGGAGUA-CUCGCGCGCUcag -5'
25048 3' -56.7 NC_005336.1 + 133484 0.73 0.472268
Target:  5'- gGCugGUGCg-CAUGGGCGCG-GAGcUCg -3'
miRNA:   3'- -CGugCACGgaGUACUCGCGCgCUC-AG- -5'
25048 3' -56.7 NC_005336.1 + 41472 0.73 0.481733
Target:  5'- aGCACGc-UCUCGUGcgcGGCGUGCGGGUCc -3'
miRNA:   3'- -CGUGCacGGAGUAC---UCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 9336 0.73 0.491289
Target:  5'- uGCGCGUGaCCUCGcaGAGCGCgaucGCGAG-Ca -3'
miRNA:   3'- -CGUGCAC-GGAGUa-CUCGCG----CGCUCaG- -5'
25048 3' -56.7 NC_005336.1 + 60781 0.72 0.510657
Target:  5'- cGUugGUGUCgugCAcgcggaUGAGCacGCGCGAGUCc -3'
miRNA:   3'- -CGugCACGGa--GU------ACUCG--CGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 2950 0.72 0.52046
Target:  5'- cGCACucGCUUacuccgaGUGAGUGCGUGAGUCa -3'
miRNA:   3'- -CGUGcaCGGAg------UACUCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 39870 0.72 0.52046
Target:  5'- cGCACGcaGCCgccgCAUcAGCGCGCG-GUCg -3'
miRNA:   3'- -CGUGCa-CGGa---GUAcUCGCGCGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 2950 0.72 0.52046
Target:  5'- cGCACucGCUUacuccgaGUGAGUGCGUGAGUCa -3'
miRNA:   3'- -CGUGcaCGGAg------UACUCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 60781 0.72 0.52046
Target:  5'- -gACGUGCC-CGUGGGCauGCGCGuGUUc -3'
miRNA:   3'- cgUGCACGGaGUACUCG--CGCGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 27956 0.72 0.540279
Target:  5'- aGCAUGc-CCUCGUacGCGCGCGAGUUg -3'
miRNA:   3'- -CGUGCacGGAGUAcuCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 133303 0.71 0.560345
Target:  5'- cCGCGggGCCgugaUCGUGuucccucuGGCGCGCGGGUCc -3'
miRNA:   3'- cGUGCa-CGG----AGUAC--------UCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 92171 0.71 0.560345
Target:  5'- cGCACGcGcCCUCGUcGaAGCGCGUgGGGUCg -3'
miRNA:   3'- -CGUGCaC-GGAGUA-C-UCGCGCG-CUCAG- -5'
25048 3' -56.7 NC_005336.1 + 61732 0.71 0.569444
Target:  5'- -aGCGUGCgCUCcaGAGCGCGCGgcagggccgaugcGGUCg -3'
miRNA:   3'- cgUGCACG-GAGuaCUCGCGCGC-------------UCAG- -5'
25048 3' -56.7 NC_005336.1 + 24254 0.71 0.570457
Target:  5'- uGCGCGUGCaCUac---GCGCGCGAgGUCg -3'
miRNA:   3'- -CGUGCACG-GAguacuCGCGCGCU-CAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.