miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25048 3' -56.7 NC_005336.1 + 2950 0.72 0.52046
Target:  5'- cGCACucGCUUacuccgaGUGAGUGCGUGAGUCa -3'
miRNA:   3'- -CGUGcaCGGAg------UACUCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 2950 0.72 0.52046
Target:  5'- cGCACucGCUUacuccgaGUGAGUGCGUGAGUCa -3'
miRNA:   3'- -CGUGcaCGGAg------UACUCGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 5835 0.7 0.631807
Target:  5'- cGCGCGgccaGCCggcgCAggaAGCGCGCGAGg- -3'
miRNA:   3'- -CGUGCa---CGGa---GUac-UCGCGCGCUCag -5'
25048 3' -56.7 NC_005336.1 + 7828 0.66 0.842246
Target:  5'- cGCACG-GCCUCcgGuAGCGCG-GAu-- -3'
miRNA:   3'- -CGUGCaCGGAGuaC-UCGCGCgCUcag -5'
25048 3' -56.7 NC_005336.1 + 7915 0.67 0.808251
Target:  5'- aGCGCGUG-CUCGaGAGCcuGCGCGAc-- -3'
miRNA:   3'- -CGUGCACgGAGUaCUCG--CGCGCUcag -5'
25048 3' -56.7 NC_005336.1 + 9336 0.73 0.491289
Target:  5'- uGCGCGUGaCCUCGcaGAGCGCgaucGCGAG-Ca -3'
miRNA:   3'- -CGUGCAC-GGAGUa-CUCGCG----CGCUCaG- -5'
25048 3' -56.7 NC_005336.1 + 9638 0.67 0.834016
Target:  5'- aGCGCG-GCCU----GGUGCGCGAG-Cg -3'
miRNA:   3'- -CGUGCaCGGAguacUCGCGCGCUCaG- -5'
25048 3' -56.7 NC_005336.1 + 9663 0.67 0.834016
Target:  5'- aGCGCGaucaGCCggCGgcacGCGCGCGGGUUg -3'
miRNA:   3'- -CGUGCa---CGGa-GUacu-CGCGCGCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 9806 0.67 0.825602
Target:  5'- -uGCG-GCCUCGUGcAGCG-GCGuGUUg -3'
miRNA:   3'- cgUGCaCGGAGUAC-UCGCgCGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 10960 0.7 0.676887
Target:  5'- aGUGCGUGCCgucgagguugcgacCGUGAgGUGCGCGAagguGUCg -3'
miRNA:   3'- -CGUGCACGGa-------------GUACU-CGCGCGCU----CAG- -5'
25048 3' -56.7 NC_005336.1 + 11312 0.71 0.580613
Target:  5'- aGCACGagGuCCUCGUcGAGCGUGCG-GUa -3'
miRNA:   3'- -CGUGCa-C-GGAGUA-CUCGCGCGCuCAg -5'
25048 3' -56.7 NC_005336.1 + 11922 0.66 0.865752
Target:  5'- aGCgGCGuUGUCUCGUccaggucugaGAGCGCG-GGGUCc -3'
miRNA:   3'- -CG-UGC-ACGGAGUA----------CUCGCGCgCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 12585 0.74 0.435393
Target:  5'- cGCGCGcGCCguggcgCAUGAGCGCacacaGCGuGUCu -3'
miRNA:   3'- -CGUGCaCGGa-----GUACUCGCG-----CGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 13958 0.68 0.784743
Target:  5'- aGCACG-GCCaCGUagucacguacaggcaGAGCGCGCGA-UCg -3'
miRNA:   3'- -CGUGCaCGGaGUA---------------CUCGCGCGCUcAG- -5'
25048 3' -56.7 NC_005336.1 + 14995 0.67 0.790256
Target:  5'- aGCGCcggGCCUCGggcucgcgcGGCGCGCGGG-Cg -3'
miRNA:   3'- -CGUGca-CGGAGUac-------UCGCGCGCUCaG- -5'
25048 3' -56.7 NC_005336.1 + 15360 0.79 0.235837
Target:  5'- cCACGUGCCggacgUCGUgcGAGCGCGCGAGaUCc -3'
miRNA:   3'- cGUGCACGG-----AGUA--CUCGCGCGCUC-AG- -5'
25048 3' -56.7 NC_005336.1 + 15811 0.7 0.621537
Target:  5'- aGCgGCGUGCgUCcguccgGUGuGCGCGCG-GUCa -3'
miRNA:   3'- -CG-UGCACGgAG------UACuCGCGCGCuCAG- -5'
25048 3' -56.7 NC_005336.1 + 16618 0.67 0.79933
Target:  5'- cGCGCGUccGCCUCcaacaCGCGCGAGg- -3'
miRNA:   3'- -CGUGCA--CGGAGuacucGCGCGCUCag -5'
25048 3' -56.7 NC_005336.1 + 17205 0.66 0.857345
Target:  5'- gGCGCG-GCCUCcucGGGCGgCGgcagcaccgcguaCGAGUCg -3'
miRNA:   3'- -CGUGCaCGGAGua-CUCGC-GC-------------GCUCAG- -5'
25048 3' -56.7 NC_005336.1 + 17249 0.7 0.642077
Target:  5'- cGCGCG-GCUggcgagCGcGcGCGCGCGGGUCg -3'
miRNA:   3'- -CGUGCaCGGa-----GUaCuCGCGCGCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.