miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25048 5' -52.4 NC_005336.1 + 49430 0.66 0.982938
Target:  5'- uGGGCaUUcUGGACCgCAUCAacgugaGGGGCa -3'
miRNA:   3'- gCCCG-AGuAUCUGGaGUAGU------UCCUGg -5'
25048 5' -52.4 NC_005336.1 + 15966 0.66 0.982938
Target:  5'- aGGGC-CcgAGGCCaaGUgCGAGGGCUc -3'
miRNA:   3'- gCCCGaGuaUCUGGagUA-GUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 38097 0.66 0.982938
Target:  5'- uGuGGCUCA---GCgUCGagGAGGACCg -3'
miRNA:   3'- gC-CCGAGUaucUGgAGUagUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 106773 0.66 0.982739
Target:  5'- uGGGCgcgCAUGGGCCguucuugcguUCggCAAacgccgcGGACCg -3'
miRNA:   3'- gCCCGa--GUAUCUGG----------AGuaGUU-------CCUGG- -5'
25048 5' -52.4 NC_005336.1 + 50306 0.66 0.980867
Target:  5'- gGGGC-CAUcGACCUCAUgc-GGcACCu -3'
miRNA:   3'- gCCCGaGUAuCUGGAGUAguuCC-UGG- -5'
25048 5' -52.4 NC_005336.1 + 67105 0.66 0.980867
Target:  5'- -cGGCUgCAaGGugCUCAUCAccaccauggacgGGGACUu -3'
miRNA:   3'- gcCCGA-GUaUCugGAGUAGU------------UCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 12692 0.66 0.980867
Target:  5'- aGGGCUaCGUGG-CCgUCAUCca-GACCu -3'
miRNA:   3'- gCCCGA-GUAUCuGG-AGUAGuucCUGG- -5'
25048 5' -52.4 NC_005336.1 + 109543 0.66 0.978613
Target:  5'- -aGGCUCcccGACCUUAUCAcGGcCCu -3'
miRNA:   3'- gcCCGAGuauCUGGAGUAGUuCCuGG- -5'
25048 5' -52.4 NC_005336.1 + 59288 0.66 0.978613
Target:  5'- uGGGCUaCAgcGGCUaCuUCGAGGACg -3'
miRNA:   3'- gCCCGA-GUauCUGGaGuAGUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 29438 0.66 0.978613
Target:  5'- -aGGCgCAUGGACg-CAgaCGAGGACCg -3'
miRNA:   3'- gcCCGaGUAUCUGgaGUa-GUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 24187 0.66 0.978613
Target:  5'- gCGGGCaCGcAGACCUUGUUGccgcAGGACg -3'
miRNA:   3'- -GCCCGaGUaUCUGGAGUAGU----UCCUGg -5'
25048 5' -52.4 NC_005336.1 + 63776 0.66 0.978377
Target:  5'- aGGGCcucaucuUCGUcGGCCgcgaCGcCAAGGGCCg -3'
miRNA:   3'- gCCCG-------AGUAuCUGGa---GUaGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 71829 0.66 0.97717
Target:  5'- uGGGCUCcgggaAGACCgUCAUCGcgcucuguucgcgauGGuGGCCu -3'
miRNA:   3'- gCCCGAGua---UCUGG-AGUAGU---------------UC-CUGG- -5'
25048 5' -52.4 NC_005336.1 + 21594 0.66 0.976169
Target:  5'- gCGGaGCUCAUcuucgcaaAGACCuUCcgCAAG-ACCg -3'
miRNA:   3'- -GCC-CGAGUA--------UCUGG-AGuaGUUCcUGG- -5'
25048 5' -52.4 NC_005336.1 + 113421 0.66 0.976169
Target:  5'- aGGGCggcuucacCGUGGACCUCGc---GGACUc -3'
miRNA:   3'- gCCCGa-------GUAUCUGGAGUaguuCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 44689 0.66 0.976169
Target:  5'- uCGuGGCcguUCcgGGcACCUCGUuuccCGAGGGCCu -3'
miRNA:   3'- -GC-CCG---AGuaUC-UGGAGUA----GUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 38748 0.66 0.973526
Target:  5'- aCGGGCUCGUGGuggccaCUCAccggcUCAcgcuGACCg -3'
miRNA:   3'- -GCCCGAGUAUCug----GAGU-----AGUuc--CUGG- -5'
25048 5' -52.4 NC_005336.1 + 128082 0.66 0.973526
Target:  5'- aCGcuGCUCGUGGACgUgCAgagCAAGGACa -3'
miRNA:   3'- -GCc-CGAGUAUCUGgA-GUa--GUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 52540 0.66 0.973526
Target:  5'- uCGGcgucucGCUCAagugGGugCUCAUCGAcGGGCg -3'
miRNA:   3'- -GCC------CGAGUa---UCugGAGUAGUU-CCUGg -5'
25048 5' -52.4 NC_005336.1 + 131204 0.66 0.973251
Target:  5'- uCGGGUcagaccgagccgaUCAUGGACuugCUCAUCGgcauGGGcGCCg -3'
miRNA:   3'- -GCCCG-------------AGUAUCUG---GAGUAGU----UCC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.