miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25048 5' -52.4 NC_005336.1 + 5902 0.76 0.571234
Target:  5'- uGGGCUCAggaUAGugCggcggCGUCGGGGGCg -3'
miRNA:   3'- gCCCGAGU---AUCugGa----GUAGUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 8296 0.67 0.953108
Target:  5'- gCGGGCgCGUGGACUgugCGUgAuGGugCa -3'
miRNA:   3'- -GCCCGaGUAUCUGGa--GUAgUuCCugG- -5'
25048 5' -52.4 NC_005336.1 + 12692 0.66 0.980867
Target:  5'- aGGGCUaCGUGG-CCgUCAUCca-GACCu -3'
miRNA:   3'- gCCCGA-GUAUCuGG-AGUAGuucCUGG- -5'
25048 5' -52.4 NC_005336.1 + 14248 0.66 0.971842
Target:  5'- cCGGGCUCGUGcgcgcgaucgacgauGcACCUCGcCAuGGugCg -3'
miRNA:   3'- -GCCCGAGUAU---------------C-UGGAGUaGUuCCugG- -5'
25048 5' -52.4 NC_005336.1 + 15966 0.66 0.982938
Target:  5'- aGGGC-CcgAGGCCaaGUgCGAGGGCUc -3'
miRNA:   3'- gCCCGaGuaUCUGGagUA-GUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 17082 0.67 0.967297
Target:  5'- cCGGGCUCGcAGugUccgcgcgcguccgUC-UCGAGGACg -3'
miRNA:   3'- -GCCCGAGUaUCugG-------------AGuAGUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 18343 0.7 0.886093
Target:  5'- cCGGGacgUCGUAGACgUgGUCAGGGGUCu -3'
miRNA:   3'- -GCCCg--AGUAUCUGgAgUAGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 19057 0.69 0.912416
Target:  5'- cCGGcGCUCuccu-CCUCGUCGAGGuaguCCu -3'
miRNA:   3'- -GCC-CGAGuaucuGGAGUAGUUCCu---GG- -5'
25048 5' -52.4 NC_005336.1 + 21594 0.66 0.976169
Target:  5'- gCGGaGCUCAUcuucgcaaAGACCuUCcgCAAG-ACCg -3'
miRNA:   3'- -GCC-CGAGUA--------UCUGG-AGuaGUUCcUGG- -5'
25048 5' -52.4 NC_005336.1 + 21980 0.71 0.822507
Target:  5'- -cGGCUCGaggacGACCccgaCAUCAAGGGCCu -3'
miRNA:   3'- gcCCGAGUau---CUGGa---GUAGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 22548 0.68 0.948891
Target:  5'- uGGuGCUCGaGGACUaCcgCGAGGACg -3'
miRNA:   3'- gCC-CGAGUaUCUGGaGuaGUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 23958 0.66 0.970677
Target:  5'- gGGGC-CGUccGGGCC-CggCGAGGACg -3'
miRNA:   3'- gCCCGaGUA--UCUGGaGuaGUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 24187 0.66 0.978613
Target:  5'- gCGGGCaCGcAGACCUUGUUGccgcAGGACg -3'
miRNA:   3'- -GCCCGaGUaUCUGGAGUAGU----UCCUGg -5'
25048 5' -52.4 NC_005336.1 + 24991 0.72 0.786104
Target:  5'- uCGGGUuccUCGUacAGACCUUgccgGUCGucGGGACCa -3'
miRNA:   3'- -GCCCG---AGUA--UCUGGAG----UAGU--UCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 28363 0.66 0.970677
Target:  5'- gCGGGag---AG-CCUCAUCGAGGcGCCc -3'
miRNA:   3'- -GCCCgaguaUCuGGAGUAGUUCC-UGG- -5'
25048 5' -52.4 NC_005336.1 + 28860 0.7 0.878912
Target:  5'- aGaGGCUCAUccGGGCCauggcCAUCAugcggucggccGGGACCa -3'
miRNA:   3'- gC-CCGAGUA--UCUGGa----GUAGU-----------UCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 29426 0.72 0.795447
Target:  5'- --uGCUCAUGGACCUCGUCAAcGAa- -3'
miRNA:   3'- gccCGAGUAUCUGGAGUAGUUcCUgg -5'
25048 5' -52.4 NC_005336.1 + 29438 0.66 0.978613
Target:  5'- -aGGCgCAUGGACg-CAgaCGAGGACCg -3'
miRNA:   3'- gcCCGaGUAUCUGgaGUa-GUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 30127 0.71 0.851183
Target:  5'- uCGGGCUCGUAGACCagacCGgccuugagcagagccUCGAGcACCu -3'
miRNA:   3'- -GCCCGAGUAUCUGGa---GU---------------AGUUCcUGG- -5'
25048 5' -52.4 NC_005336.1 + 30315 0.68 0.950607
Target:  5'- gGGGCUCGcAGccaccGCCUCGUCGuacaccgacaucggcAGGucGCCg -3'
miRNA:   3'- gCCCGAGUaUC-----UGGAGUAGU---------------UCC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.