miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25048 5' -52.4 NC_005336.1 + 64250 0.68 0.94443
Target:  5'- gCGGcGCUUcgGcauCCgCGUCAAGGACCu -3'
miRNA:   3'- -GCC-CGAGuaUcu-GGaGUAGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 102011 0.69 0.902356
Target:  5'- uCGGcGCcggaguucucgcccaUCGUGG-CCagCAUCAAGGGCCa -3'
miRNA:   3'- -GCC-CG---------------AGUAUCuGGa-GUAGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 104874 0.69 0.912416
Target:  5'- gCGGGCgCA-AGACCaagcUCAUCcggcaggccaacGAGGGCCg -3'
miRNA:   3'- -GCCCGaGUaUCUGG----AGUAG------------UUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 31321 0.69 0.918379
Target:  5'- uGGGCUgGUAGuuguacagcaGCCg---CGGGGACCa -3'
miRNA:   3'- gCCCGAgUAUC----------UGGaguaGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 62320 0.69 0.924092
Target:  5'- gCGGGCUCcgcGGCgUCGUCGAaggcGGugCg -3'
miRNA:   3'- -GCCCGAGuauCUGgAGUAGUU----CCugG- -5'
25048 5' -52.4 NC_005336.1 + 88964 0.68 0.929553
Target:  5'- gCGGGCUCGUGcgcaGCCUCAcCGAG-AUCa -3'
miRNA:   3'- -GCCCGAGUAUc---UGGAGUaGUUCcUGG- -5'
25048 5' -52.4 NC_005336.1 + 96986 0.68 0.929553
Target:  5'- uCGuGCUgccCGUGGGCCUCuUCGcGGACCu -3'
miRNA:   3'- -GCcCGA---GUAUCUGGAGuAGUuCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 70704 0.68 0.934763
Target:  5'- -cGGCUgGUGGGCgUCAUCAAcGACa -3'
miRNA:   3'- gcCCGAgUAUCUGgAGUAGUUcCUGg -5'
25048 5' -52.4 NC_005336.1 + 39911 0.68 0.939721
Target:  5'- aCGuGCUCAUgucacAGACCgcgucuUCAUCGAGG-CCg -3'
miRNA:   3'- -GCcCGAGUA-----UCUGG------AGUAGUUCCuGG- -5'
25048 5' -52.4 NC_005336.1 + 44703 0.69 0.899743
Target:  5'- uCGcGGCgcgCAUGGcCCgcgcCAUCGAGGACg -3'
miRNA:   3'- -GC-CCGa--GUAUCuGGa---GUAGUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 93180 0.7 0.886093
Target:  5'- gCGGGCUCAgcgccGACCUC-UCGucGGAgCu -3'
miRNA:   3'- -GCCCGAGUau---CUGGAGuAGUu-CCUgG- -5'
25048 5' -52.4 NC_005336.1 + 115403 0.7 0.86386
Target:  5'- uCGGcGCgcccagCAUGGACCaCGUCGAGGcggucGCCg -3'
miRNA:   3'- -GCC-CGa-----GUAUCUGGaGUAGUUCC-----UGG- -5'
25048 5' -52.4 NC_005336.1 + 73753 0.8 0.388789
Target:  5'- gCGGGCUCAUGGccACCgaCAUCGAGGucuGCCu -3'
miRNA:   3'- -GCCCGAGUAUC--UGGa-GUAGUUCC---UGG- -5'
25048 5' -52.4 NC_005336.1 + 55858 0.71 0.813658
Target:  5'- aCGGGCgCGUGGuggcGCCgaaCGUCGacAGGACCu -3'
miRNA:   3'- -GCCCGaGUAUC----UGGa--GUAGU--UCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 114966 0.71 0.822507
Target:  5'- cCGGaaGCUCAUGGucucccgcgcCCUCGUCAAGGAa- -3'
miRNA:   3'- -GCC--CGAGUAUCu---------GGAGUAGUUCCUgg -5'
25048 5' -52.4 NC_005336.1 + 21980 0.71 0.822507
Target:  5'- -cGGCUCGaggacGACCccgaCAUCAAGGGCCu -3'
miRNA:   3'- gcCCGAGUau---CUGGa---GUAGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 64446 0.71 0.822507
Target:  5'- gCGGuGCUC---GAgCUCGUCAGGGACg -3'
miRNA:   3'- -GCC-CGAGuauCUgGAGUAGUUCCUGg -5'
25048 5' -52.4 NC_005336.1 + 83239 0.71 0.834589
Target:  5'- cCGcGGCUgGaggaagacgaagaccUGGACCUCcUCGAGGAUCu -3'
miRNA:   3'- -GC-CCGAgU---------------AUCUGGAGuAGUUCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 122594 0.71 0.847929
Target:  5'- --aGCUCGccAGugCUCGUCAuGGACCg -3'
miRNA:   3'- gccCGAGUa-UCugGAGUAGUuCCUGG- -5'
25048 5' -52.4 NC_005336.1 + 30127 0.71 0.851183
Target:  5'- uCGGGCUCGUAGACCagacCGgccuugagcagagccUCGAGcACCu -3'
miRNA:   3'- -GCCCGAGUAUCUGGa---GU---------------AGUUCcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.